Gene : Glyma.16G218400 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2184
Name:  ? Glyma.16G218400 Secondary Identifier:  ? PAC:30559026
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G218400 0.5kb upstream 0.5kb upstream 2306 true Chr16: 37593164-37595469 Glycine max
Glyma.16G218400 0.5kb upstream 0.5kb upstream 500 false Chr16: 37594970-37595469 Glycine max
Glyma.16G218400 0.5kb downstream 0.5kb downstream 2306 true Chr16: 37592664-37594969 Glycine max
Glyma.16G218400 0.5kb downstream 0.5kb downstream 500 false Chr16: 37592664-37593163 Glycine max
Glyma.16G218400 1.0kb upstream 1.0kb upstream 2806 true Chr16: 37593164-37595969 Glycine max
Glyma.16G218400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 37594970-37595969 Glycine max
Glyma.16G218400 1.0kb downstream 1.0kb downstream 2806 true Chr16: 37592164-37594969 Glycine max
Glyma.16G218400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 37592164-37593163 Glycine max
Glyma.16G218400 2.0kb upstream 2.0kb upstream 3806 true Chr16: 37593164-37596969 Glycine max
Glyma.16G218400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 37594970-37596969 Glycine max
Glyma.16G218400 2.0kb downstream 2.0kb downstream 3806 true Chr16: 37591164-37594969 Glycine max
Glyma.16G218400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 37591164-37593163 Glycine max
Glyma.16G218400 5.0kb upstream 5.0kb upstream 6806 true Chr16: 37593164-37599969 Glycine max
Glyma.16G218400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 37594970-37599969 Glycine max
Glyma.16G218400 5.0kb downstream 5.0kb downstream 6806 true Chr16: 37588164-37594969 Glycine max
Glyma.16G218400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 37588164-37593163 Glycine max
Glyma.16G218400 10.0kb upstream 10.0kb upstream 11806 true Chr16: 37593164-37604969 Glycine max
Glyma.16G218400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 37594970-37604969 Glycine max
Glyma.16G218400 10.0kb downstream 10.0kb downstream 11806 true Chr16: 37583164-37594969 Glycine max
Glyma.16G218400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 37583164-37593163 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299753 5265 Fabidae View MSA
124064804 5270 Rosid View MSA
123740477 5271 Pentapetalae View MSA
122791642 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.95941 0.0 11.6215    
cufflinks 2.52946 0.0 7.92407    
cufflinks 8.41497 0.0 22.8667   High
cufflinks 2.68876 0.0 8.3267    
cufflinks 3.21713 0.0 9.71678    
cufflinks 0.758601 0.0 2.71066   Low
cufflinks 2.36369 0.0 7.45206    
cufflinks 5.51381 0.0 15.5705    
cufflinks 1.7575 0.0 5.78417    
cufflinks 3.225        
cufflinks 1.251       Low
cufflinks 2.98        
cufflinks 5.33        
cufflinks 6.982     High High
cufflinks 1.134       Low
cufflinks 4.944        
cufflinks 1.751        
cufflinks 2.889        
cufflinks 4.617        
cufflinks 4.942        
cufflinks 1.63       Low
cufflinks 4.706        
cufflinks 4.918        
cufflinks 1.351       Low
cufflinks 4.908        
cufflinks 1.683        

0 Strain