Gene : Glyma.17G058600 G. max Wm82.a2.v1
Defline:  (1 of 309) PF00010 - Helix-loop-helix DNA-binding domain (HLH) Genomic Order:  586
Name:  ? Glyma.17G058600 Secondary Identifier:  ? PAC:30481019
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G058600 0.5kb upstream 0.5kb upstream 7178   true Chr17: 4458199-4465376 Glycine max
Glyma.17G058600 0.5kb upstream 0.5kb upstream 500   false Chr17: 4458199-4458698 Glycine max
Glyma.17G058600 0.5kb downstream 0.5kb downstream 7178   true Chr17: 4458699-4465876 Glycine max
Glyma.17G058600 0.5kb downstream 0.5kb downstream 500   false Chr17: 4465377-4465876 Glycine max
Glyma.17G058600 1.0kb upstream 1.0kb upstream 7678   true Chr17: 4457699-4465376 Glycine max
Glyma.17G058600 1.0kb upstream 1.0kb upstream 1000   false Chr17: 4457699-4458698 Glycine max
Glyma.17G058600 1.0kb downstream 1.0kb downstream 7678   true Chr17: 4458699-4466376 Glycine max
Glyma.17G058600 1.0kb downstream 1.0kb downstream 1000   false Chr17: 4465377-4466376 Glycine max
Glyma.17G058600 2.0kb upstream 2.0kb upstream 8678   true Chr17: 4456699-4465376 Glycine max
Glyma.17G058600 2.0kb upstream 2.0kb upstream 2000   false Chr17: 4456699-4458698 Glycine max
Glyma.17G058600 2.0kb downstream 2.0kb downstream 8678   true Chr17: 4458699-4467376 Glycine max
Glyma.17G058600 2.0kb downstream 2.0kb downstream 2000   false Chr17: 4465377-4467376 Glycine max
Glyma.17G058600 5.0kb upstream 5.0kb upstream 11678   true Chr17: 4453699-4465376 Glycine max
Glyma.17G058600 5.0kb upstream 5.0kb upstream 5000   false Chr17: 4453699-4458698 Glycine max
Glyma.17G058600 5.0kb downstream 5.0kb downstream 11678   true Chr17: 4458699-4470376 Glycine max
Glyma.17G058600 5.0kb downstream 5.0kb downstream 5000   false Chr17: 4465377-4470376 Glycine max
Glyma.17G058600 10.0kb upstream 10.0kb upstream 16678   true Chr17: 4448699-4465376 Glycine max
Glyma.17G058600 10.0kb upstream 10.0kb upstream 10000   false Chr17: 4448699-4458698 Glycine max
Glyma.17G058600 10.0kb downstream 10.0kb downstream 16678   true Chr17: 4458699-4475376 Glycine max
Glyma.17G058600 10.0kb downstream 10.0kb downstream 10000   false Chr17: 4465377-4475376 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122244152 5265 Fabidae Singleton cluster - no MSA
123988523 5270 Rosid Singleton cluster - no MSA
123563697 5271 Pentapetalae Singleton cluster - no MSA
122598473 5272 Eudicot Singleton cluster - no MSA
122050016 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.41737 0.0 9.24611    
cufflinks 0.650405 0.0 3.10007    
cufflinks 0.412208 0.0 3.08635   Low
cufflinks 0.676924 0.0 3.17414    
cufflinks 4.24267 0.0 20.4179   High
cufflinks 2.87437 0.0 15.3951    
cufflinks 2.06775 0.0 7.97597    
cufflinks 0.600704 0.0 2.84445    
cufflinks 3.90869 0.0 20.1576   High
cufflinks 2.661        
cufflinks 6.283     High  
cufflinks 0.244       Low
cufflinks 0.69        
cufflinks 0.192       Low
cufflinks 12.612     High High
cufflinks 1.616        
cufflinks 63.1     High High
cufflinks 0.306       Low
cufflinks 0.495        
cufflinks 0.602        
cufflinks 5.745     High  
cufflinks 0.837        
cufflinks 8.373     High  
cufflinks 3.538        
cufflinks 0.623        
cufflinks 17.112     High High

0 Strain