Gene : Glyma.17G083700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10947 - PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 Genomic Order:  837
Name:  ? Glyma.17G083700 Secondary Identifier:  ? PAC:30482306
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G083700 0.5kb upstream 0.5kb upstream 9992   true Chr17: 6487186-6497177 Glycine max
Glyma.17G083700 0.5kb upstream 0.5kb upstream 500   false Chr17: 6487186-6487685 Glycine max
Glyma.17G083700 0.5kb downstream 0.5kb downstream 9992   true Chr17: 6487686-6497677 Glycine max
Glyma.17G083700 0.5kb downstream 0.5kb downstream 500   false Chr17: 6497178-6497677 Glycine max
Glyma.17G083700 1.0kb upstream 1.0kb upstream 10492   true Chr17: 6486686-6497177 Glycine max
Glyma.17G083700 1.0kb upstream 1.0kb upstream 1000   false Chr17: 6486686-6487685 Glycine max
Glyma.17G083700 1.0kb downstream 1.0kb downstream 10492   true Chr17: 6487686-6498177 Glycine max
Glyma.17G083700 1.0kb downstream 1.0kb downstream 1000   false Chr17: 6497178-6498177 Glycine max
Glyma.17G083700 2.0kb upstream 2.0kb upstream 11492   true Chr17: 6485686-6497177 Glycine max
Glyma.17G083700 2.0kb upstream 2.0kb upstream 2000   false Chr17: 6485686-6487685 Glycine max
Glyma.17G083700 2.0kb downstream 2.0kb downstream 11492   true Chr17: 6487686-6499177 Glycine max
Glyma.17G083700 2.0kb downstream 2.0kb downstream 2000   false Chr17: 6497178-6499177 Glycine max
Glyma.17G083700 5.0kb upstream 5.0kb upstream 14492   true Chr17: 6482686-6497177 Glycine max
Glyma.17G083700 5.0kb upstream 5.0kb upstream 5000   false Chr17: 6482686-6487685 Glycine max
Glyma.17G083700 5.0kb downstream 5.0kb downstream 14492   true Chr17: 6487686-6502177 Glycine max
Glyma.17G083700 5.0kb downstream 5.0kb downstream 5000   false Chr17: 6497178-6502177 Glycine max
Glyma.17G083700 10.0kb upstream 10.0kb upstream 19492   true Chr17: 6477686-6497177 Glycine max
Glyma.17G083700 10.0kb upstream 10.0kb upstream 10000   false Chr17: 6477686-6487685 Glycine max
Glyma.17G083700 10.0kb downstream 10.0kb downstream 19492   true Chr17: 6487686-6507177 Glycine max
Glyma.17G083700 10.0kb downstream 10.0kb downstream 10000   false Chr17: 6497178-6507177 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302005 5265 Fabidae View MSA
124062601 5270 Rosid View MSA
123738962 5271 Pentapetalae View MSA
122792851 5272 Eudicot View MSA
122042437 5273 Angiosperm View MSA
121345306 5274 Embryophyte View MSA
123425015 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.8569 0.0 42.3273    
cufflinks 15.2796 0.0 40.7799    
cufflinks 14.7208 0.0 39.2854    
cufflinks 17.2367 0.0 46.0845    
cufflinks 22.8483 0.0 61.637 High High
cufflinks 12.6819 0.0 33.8545   Low
cufflinks 28.8506 0.0 78.8731 High High
cufflinks 16.2243 0.0 43.3357    
cufflinks 20.655 0.0 55.5409 High  
cufflinks 2.924        
cufflinks 1.054       Low
cufflinks 4.576        
cufflinks 7.378     High High
cufflinks 10.321     High High
cufflinks 2.46        
cufflinks 3.331        
cufflinks 1.82        
cufflinks 5.158        
cufflinks 4.49        
cufflinks 2.812        
cufflinks 1.676       Low
cufflinks 2.961        
cufflinks 3.53        
cufflinks 1.249       Low
cufflinks 3.511        
cufflinks 2.861        

0 Strain