Gene : Glyma.17G089200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12280:SF20 - PANTOTHENATE KINASE 4 Genomic Order:  892
Name:  ? Glyma.17G089200 Secondary Identifier:  ? PAC:30478863
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PANTO-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G089200 0.5kb upstream 0.5kb upstream 12202   true Chr17: 6925938-6938139 Glycine max
Glyma.17G089200 0.5kb upstream 0.5kb upstream 500   false Chr17: 6925938-6926437 Glycine max
Glyma.17G089200 0.5kb downstream 0.5kb downstream 12202   true Chr17: 6926438-6938639 Glycine max
Glyma.17G089200 0.5kb downstream 0.5kb downstream 500   false Chr17: 6938140-6938639 Glycine max
Glyma.17G089200 1.0kb upstream 1.0kb upstream 12702   true Chr17: 6925438-6938139 Glycine max
Glyma.17G089200 1.0kb upstream 1.0kb upstream 1000   false Chr17: 6925438-6926437 Glycine max
Glyma.17G089200 1.0kb downstream 1.0kb downstream 12702   true Chr17: 6926438-6939139 Glycine max
Glyma.17G089200 1.0kb downstream 1.0kb downstream 1000   false Chr17: 6938140-6939139 Glycine max
Glyma.17G089200 2.0kb upstream 2.0kb upstream 13702   true Chr17: 6924438-6938139 Glycine max
Glyma.17G089200 2.0kb upstream 2.0kb upstream 2000   false Chr17: 6924438-6926437 Glycine max
Glyma.17G089200 2.0kb downstream 2.0kb downstream 13702   true Chr17: 6926438-6940139 Glycine max
Glyma.17G089200 2.0kb downstream 2.0kb downstream 2000   false Chr17: 6938140-6940139 Glycine max
Glyma.17G089200 5.0kb upstream 5.0kb upstream 16702   true Chr17: 6921438-6938139 Glycine max
Glyma.17G089200 5.0kb upstream 5.0kb upstream 5000   false Chr17: 6921438-6926437 Glycine max
Glyma.17G089200 5.0kb downstream 5.0kb downstream 16702   true Chr17: 6926438-6943139 Glycine max
Glyma.17G089200 5.0kb downstream 5.0kb downstream 5000   false Chr17: 6938140-6943139 Glycine max
Glyma.17G089200 10.0kb upstream 10.0kb upstream 21702   true Chr17: 6916438-6938139 Glycine max
Glyma.17G089200 10.0kb upstream 10.0kb upstream 10000   false Chr17: 6916438-6926437 Glycine max
Glyma.17G089200 10.0kb downstream 10.0kb downstream 21702   true Chr17: 6926438-6948139 Glycine max
Glyma.17G089200 10.0kb downstream 10.0kb downstream 10000   false Chr17: 6938140-6948139 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121618041 5273 Angiosperm View MSA
122254800 5265 Fabidae View MSA
123996805 5270 Rosid View MSA
123571213 5271 Pentapetalae View MSA
122605941 5272 Eudicot View MSA
121351154 5274 Embryophyte View MSA
123423808 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.4013 0.0 80.1789 High High
cufflinks 8.8382 0.0 27.811    
cufflinks 23.346 0.0 76.7143 High High
cufflinks 11.3796 0.0 33.9302    
cufflinks 11.5496 0.0 35.3935    
cufflinks 30.0584 0.0 106.632 High High
cufflinks 9.48526 0.0 29.1112    
cufflinks 12.7817 0.0 39.113    
cufflinks 8.49832 0.0 26.4394   Low
cufflinks 1.808        
cufflinks 1.585        
cufflinks 2.707        
cufflinks 3.214       High
cufflinks 1.838        
cufflinks 0.529       Low
cufflinks 2.412        
cufflinks 2.259        
cufflinks 1.664        
cufflinks 2.204        
cufflinks 2.273        
cufflinks 2.294        
cufflinks 3.021        
cufflinks 1.992        
cufflinks 2.724        
cufflinks 2.023        
cufflinks 2.971        

0 Strain