Gene : Glyma.17G133300 G. max Wm82.a2.v1
Defline:  (1 of 1) PF05205 - COMPASS (Complex proteins associated with Set1p) component shg1 (COMPASS-Shg1) Genomic Order:  1333
Name:  ? Glyma.17G133300 Secondary Identifier:  ? PAC:30480045
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G133300 0.5kb upstream 0.5kb upstream 2129   true Chr17: 10738045-10740173 Glycine max
Glyma.17G133300 0.5kb upstream 0.5kb upstream 500   false Chr17: 10738045-10738544 Glycine max
Glyma.17G133300 0.5kb downstream 0.5kb downstream 2129   true Chr17: 10738545-10740673 Glycine max
Glyma.17G133300 0.5kb downstream 0.5kb downstream 500   false Chr17: 10740174-10740673 Glycine max
Glyma.17G133300 1.0kb upstream 1.0kb upstream 2629   true Chr17: 10737545-10740173 Glycine max
Glyma.17G133300 1.0kb upstream 1.0kb upstream 1000   false Chr17: 10737545-10738544 Glycine max
Glyma.17G133300 1.0kb downstream 1.0kb downstream 2629   true Chr17: 10738545-10741173 Glycine max
Glyma.17G133300 1.0kb downstream 1.0kb downstream 1000   false Chr17: 10740174-10741173 Glycine max
Glyma.17G133300 2.0kb upstream 2.0kb upstream 3629   true Chr17: 10736545-10740173 Glycine max
Glyma.17G133300 2.0kb upstream 2.0kb upstream 2000   false Chr17: 10736545-10738544 Glycine max
Glyma.17G133300 2.0kb downstream 2.0kb downstream 3629   true Chr17: 10738545-10742173 Glycine max
Glyma.17G133300 2.0kb downstream 2.0kb downstream 2000   false Chr17: 10740174-10742173 Glycine max
Glyma.17G133300 5.0kb upstream 5.0kb upstream 6629   true Chr17: 10733545-10740173 Glycine max
Glyma.17G133300 5.0kb upstream 5.0kb upstream 5000   false Chr17: 10733545-10738544 Glycine max
Glyma.17G133300 5.0kb downstream 5.0kb downstream 6629   true Chr17: 10738545-10745173 Glycine max
Glyma.17G133300 5.0kb downstream 5.0kb downstream 5000   false Chr17: 10740174-10745173 Glycine max
Glyma.17G133300 10.0kb upstream 10.0kb upstream 11629   true Chr17: 10728545-10740173 Glycine max
Glyma.17G133300 10.0kb upstream 10.0kb upstream 10000   false Chr17: 10728545-10738544 Glycine max
Glyma.17G133300 10.0kb downstream 10.0kb downstream 11629   true Chr17: 10738545-10750173 Glycine max
Glyma.17G133300 10.0kb downstream 10.0kb downstream 10000   false Chr17: 10740174-10750173 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305161 5265 Fabidae View MSA
124070880 5270 Rosid View MSA
123741769 5271 Pentapetalae View MSA
122791233 5272 Eudicot View MSA
122049706 5273 Angiosperm View MSA
121311553 5274 Embryophyte View MSA
123427523 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.40303 0.0 24.0624    
cufflinks 7.27311 0.0 21.2175    
cufflinks 6.12667 0.0 18.2155    
cufflinks 7.72411 0.0 22.3092    
cufflinks 6.51386 0.0 19.2679    
cufflinks 10.8307 0.0 30.1797   High
cufflinks 4.6103 0.0 14.3353   Low
cufflinks 11.751 0.0 32.4908   High
cufflinks 7.39347 0.0 21.5468    
cufflinks 7.361       High
cufflinks 3.105       Low
cufflinks 5.971        
cufflinks 6.586        
cufflinks 7.443     High High
cufflinks 3.937       Low
cufflinks 4.918        
cufflinks 8.34     High High
cufflinks 6.238        
cufflinks 5.421        
cufflinks 4.965        
cufflinks 3.723       Low
cufflinks 6.019        
cufflinks 6.363        
cufflinks 4.083        
cufflinks 5.123        
cufflinks 4.425        

0 Strain