Gene : Glyma.17G129300 G. max Wm82.a2.v1
Defline:  (1 of 4) PF10172 - Det1 complexing ubiquitin ligase (DDA1) Genomic Order:  1293
Name:  ? Glyma.17G129300 Secondary Identifier:  ? PAC:30480442
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G129300 0.5kb upstream 0.5kb upstream 5053   true Chr17: 10368327-10373379 Glycine max
Glyma.17G129300 0.5kb upstream 0.5kb upstream 500   false Chr17: 10368327-10368826 Glycine max
Glyma.17G129300 0.5kb downstream 0.5kb downstream 5053   true Chr17: 10368827-10373879 Glycine max
Glyma.17G129300 0.5kb downstream 0.5kb downstream 500   false Chr17: 10373380-10373879 Glycine max
Glyma.17G129300 1.0kb upstream 1.0kb upstream 5553   true Chr17: 10367827-10373379 Glycine max
Glyma.17G129300 1.0kb upstream 1.0kb upstream 1000   false Chr17: 10367827-10368826 Glycine max
Glyma.17G129300 1.0kb downstream 1.0kb downstream 5553   true Chr17: 10368827-10374379 Glycine max
Glyma.17G129300 1.0kb downstream 1.0kb downstream 1000   false Chr17: 10373380-10374379 Glycine max
Glyma.17G129300 2.0kb upstream 2.0kb upstream 6553   true Chr17: 10366827-10373379 Glycine max
Glyma.17G129300 2.0kb upstream 2.0kb upstream 2000   false Chr17: 10366827-10368826 Glycine max
Glyma.17G129300 2.0kb downstream 2.0kb downstream 6553   true Chr17: 10368827-10375379 Glycine max
Glyma.17G129300 2.0kb downstream 2.0kb downstream 2000   false Chr17: 10373380-10375379 Glycine max
Glyma.17G129300 5.0kb upstream 5.0kb upstream 9553   true Chr17: 10363827-10373379 Glycine max
Glyma.17G129300 5.0kb upstream 5.0kb upstream 5000   false Chr17: 10363827-10368826 Glycine max
Glyma.17G129300 5.0kb downstream 5.0kb downstream 9553   true Chr17: 10368827-10378379 Glycine max
Glyma.17G129300 5.0kb downstream 5.0kb downstream 5000   false Chr17: 10373380-10378379 Glycine max
Glyma.17G129300 10.0kb upstream 10.0kb upstream 14553   true Chr17: 10358827-10373379 Glycine max
Glyma.17G129300 10.0kb upstream 10.0kb upstream 10000   false Chr17: 10358827-10368826 Glycine max
Glyma.17G129300 10.0kb downstream 10.0kb downstream 14553   true Chr17: 10368827-10383379 Glycine max
Glyma.17G129300 10.0kb downstream 10.0kb downstream 10000   false Chr17: 10373380-10383379 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299442 5265 Fabidae View MSA
124066068 5270 Rosid View MSA
123746630 5271 Pentapetalae View MSA
122792914 5272 Eudicot View MSA
122045612 5273 Angiosperm View MSA
121347246 5274 Embryophyte View MSA
123425668 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.4745 0.0 45.568    
cufflinks 16.6265 0.0 60.176    
cufflinks 7.49361 0.0 28.7396   Low
cufflinks 13.8562 0.0 52.0965    
cufflinks 13.1579 0.0 50.2471    
cufflinks 10.8283 0.0 43.4861    
cufflinks 35.4722 0.0 118.697 High High
cufflinks 11.2726 0.0 44.699    
cufflinks 13.2378 0.0 50.3101    
cufflinks 1.217        
cufflinks 1.114        
cufflinks 0.868        
cufflinks 1.148        
cufflinks 1.408       High
cufflinks 0.835        
cufflinks 0.938        
cufflinks 1.747       High
cufflinks 1.195        
cufflinks 1.234        
cufflinks 0.894        
cufflinks 0.905        
cufflinks 0.986        
cufflinks 1.056        
cufflinks 0.67       Low
cufflinks 0.916        
cufflinks 0.969        

0 Strain