Gene : Glyma.17G168400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR10896:SF17 - BETA-1,4-XYLOSYLTRANSFERASE IRX14-RELATED Genomic Order:  1684
Name:  ? Glyma.17G168400 Secondary Identifier:  ? PAC:30481739
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5800 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G168400 0.5kb upstream 0.5kb upstream 6205   true Chr17: 15563260-15569464 Glycine max
Glyma.17G168400 0.5kb upstream 0.5kb upstream 500   false Chr17: 15568965-15569464 Glycine max
Glyma.17G168400 0.5kb downstream 0.5kb downstream 6205   true Chr17: 15562760-15568964 Glycine max
Glyma.17G168400 0.5kb downstream 0.5kb downstream 500   false Chr17: 15562760-15563259 Glycine max
Glyma.17G168400 1.0kb upstream 1.0kb upstream 6705   true Chr17: 15563260-15569964 Glycine max
Glyma.17G168400 1.0kb upstream 1.0kb upstream 1000   false Chr17: 15568965-15569964 Glycine max
Glyma.17G168400 1.0kb downstream 1.0kb downstream 6705   true Chr17: 15562260-15568964 Glycine max
Glyma.17G168400 1.0kb downstream 1.0kb downstream 1000   false Chr17: 15562260-15563259 Glycine max
Glyma.17G168400 2.0kb upstream 2.0kb upstream 7705   true Chr17: 15563260-15570964 Glycine max
Glyma.17G168400 2.0kb upstream 2.0kb upstream 2000   false Chr17: 15568965-15570964 Glycine max
Glyma.17G168400 2.0kb downstream 2.0kb downstream 7705   true Chr17: 15561260-15568964 Glycine max
Glyma.17G168400 2.0kb downstream 2.0kb downstream 2000   false Chr17: 15561260-15563259 Glycine max
Glyma.17G168400 5.0kb upstream 5.0kb upstream 10705   true Chr17: 15563260-15573964 Glycine max
Glyma.17G168400 5.0kb upstream 5.0kb upstream 5000   false Chr17: 15568965-15573964 Glycine max
Glyma.17G168400 5.0kb downstream 5.0kb downstream 10705   true Chr17: 15558260-15568964 Glycine max
Glyma.17G168400 5.0kb downstream 5.0kb downstream 5000   false Chr17: 15558260-15563259 Glycine max
Glyma.17G168400 10.0kb upstream 10.0kb upstream 15705   true Chr17: 15563260-15578964 Glycine max
Glyma.17G168400 10.0kb upstream 10.0kb upstream 10000   false Chr17: 15568965-15578964 Glycine max
Glyma.17G168400 10.0kb downstream 10.0kb downstream 15705   true Chr17: 15553260-15568964 Glycine max
Glyma.17G168400 10.0kb downstream 10.0kb downstream 10000   false Chr17: 15553260-15563259 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041384 5273 Angiosperm View MSA
122298595 5265 Fabidae View MSA
124036535 5270 Rosid View MSA
123609861 5271 Pentapetalae View MSA
122644499 5272 Eudicot View MSA
121350855 5274 Embryophyte View MSA
123381907 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.85773 0.0 22.2022    
cufflinks 1.53525 0.0 7.70121    
cufflinks 2.47069 0.0 10.5328    
cufflinks 1.90732 0.0 6.51355    
cufflinks 3.19356 0.0 12.067    
cufflinks 9.53914 0.0 33.3657   High
cufflinks 0.665525 0.0 2.90943   Low
cufflinks 4.15589 0.0 14.5824    
cufflinks 2.84653 0.0 11.4769    
cufflinks 0.677        
cufflinks 0.523        
cufflinks 0.424        
cufflinks 0.813       High
cufflinks 0.443        
cufflinks 0.109       Low
cufflinks 0.345        
cufflinks 1.012       High
cufflinks 0.237       Low
cufflinks 0.476        
cufflinks 0.226       Low
cufflinks 0.513        
cufflinks 0.451        
cufflinks 0.326        
cufflinks 0.794       High
cufflinks 0.236       Low
cufflinks 0.404        

0 Strain