Gene : Glyma.17G201400 G. max Wm82.a2.v1
Defline:  (1 of 2) 2.1.1.177 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase / rRNA large subunit methyltransferase H Genomic Order:  2014
Name:  ? Glyma.17G201400 Secondary Identifier:  ? PAC:30481910
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G201400 0.5kb upstream 0.5kb upstream 5277   true Chr17: 32021667-32026943 Glycine max
Glyma.17G201400 0.5kb upstream 0.5kb upstream 500   false Chr17: 32026444-32026943 Glycine max
Glyma.17G201400 0.5kb downstream 0.5kb downstream 5277   true Chr17: 32021167-32026443 Glycine max
Glyma.17G201400 0.5kb downstream 0.5kb downstream 500   false Chr17: 32021167-32021666 Glycine max
Glyma.17G201400 1.0kb upstream 1.0kb upstream 5777   true Chr17: 32021667-32027443 Glycine max
Glyma.17G201400 1.0kb upstream 1.0kb upstream 1000   false Chr17: 32026444-32027443 Glycine max
Glyma.17G201400 1.0kb downstream 1.0kb downstream 5777   true Chr17: 32020667-32026443 Glycine max
Glyma.17G201400 1.0kb downstream 1.0kb downstream 1000   false Chr17: 32020667-32021666 Glycine max
Glyma.17G201400 2.0kb upstream 2.0kb upstream 6777   true Chr17: 32021667-32028443 Glycine max
Glyma.17G201400 2.0kb upstream 2.0kb upstream 2000   false Chr17: 32026444-32028443 Glycine max
Glyma.17G201400 2.0kb downstream 2.0kb downstream 6777   true Chr17: 32019667-32026443 Glycine max
Glyma.17G201400 2.0kb downstream 2.0kb downstream 2000   false Chr17: 32019667-32021666 Glycine max
Glyma.17G201400 5.0kb upstream 5.0kb upstream 9777   true Chr17: 32021667-32031443 Glycine max
Glyma.17G201400 5.0kb upstream 5.0kb upstream 5000   false Chr17: 32026444-32031443 Glycine max
Glyma.17G201400 5.0kb downstream 5.0kb downstream 9777   true Chr17: 32016667-32026443 Glycine max
Glyma.17G201400 5.0kb downstream 5.0kb downstream 5000   false Chr17: 32016667-32021666 Glycine max
Glyma.17G201400 10.0kb upstream 10.0kb upstream 14777   true Chr17: 32021667-32036443 Glycine max
Glyma.17G201400 10.0kb upstream 10.0kb upstream 10000   false Chr17: 32026444-32036443 Glycine max
Glyma.17G201400 10.0kb downstream 10.0kb downstream 14777   true Chr17: 32011667-32026443 Glycine max
Glyma.17G201400 10.0kb downstream 10.0kb downstream 10000   false Chr17: 32011667-32021666 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041237 5273 Angiosperm View MSA
122300345 5265 Fabidae View MSA
124065291 5270 Rosid View MSA
123737666 5271 Pentapetalae View MSA
122786404 5272 Eudicot View MSA
121344768 5274 Embryophyte View MSA
123424832 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.3507 0.0 27.0956   High
cufflinks 3.27034 0.0 30.3616   High
cufflinks 1.08902 0.0 6.89461   Low
cufflinks 1.52633 0.0 11.5431    
cufflinks 1.32702 0.0 10.243    
cufflinks 2.21988 0.0 13.1226    
cufflinks 1.45383 0.0 12.4878    
cufflinks 1.19491 0.0 9.45693    
cufflinks 1.4506 0.0 10.8396    
cufflinks 0.045     Low  
cufflinks 0.018     Low Low
cufflinks 0.073     Low  
cufflinks 0.055     Low  
cufflinks 0.055     Low  
cufflinks 0.009     Low Low
cufflinks 0.114        
cufflinks 0.014     Low Low
cufflinks 0.07     Low  
cufflinks 0.101        
cufflinks 0.131       High
cufflinks 0.022     Low  
cufflinks 0.125       High
cufflinks 0.108        
cufflinks 0.02     Low  
cufflinks 0.121       High
cufflinks 0.022     Low  

0 Strain