Gene : Glyma.17G202200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR13989:SF20 - REPLICATION PROTEIN A 32 KDA SUBUNIT B Genomic Order:  2022
Name:  ? Glyma.17G202200 Secondary Identifier:  ? PAC:30480565
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G202200 0.5kb upstream 0.5kb upstream 4720   true Chr17: 32190584-32195303 Glycine max
Glyma.17G202200 0.5kb upstream 0.5kb upstream 500   false Chr17: 32194804-32195303 Glycine max
Glyma.17G202200 0.5kb downstream 0.5kb downstream 4720   true Chr17: 32190084-32194803 Glycine max
Glyma.17G202200 0.5kb downstream 0.5kb downstream 500   false Chr17: 32190084-32190583 Glycine max
Glyma.17G202200 1.0kb upstream 1.0kb upstream 5220   true Chr17: 32190584-32195803 Glycine max
Glyma.17G202200 1.0kb upstream 1.0kb upstream 1000   false Chr17: 32194804-32195803 Glycine max
Glyma.17G202200 1.0kb downstream 1.0kb downstream 5220   true Chr17: 32189584-32194803 Glycine max
Glyma.17G202200 1.0kb downstream 1.0kb downstream 1000   false Chr17: 32189584-32190583 Glycine max
Glyma.17G202200 2.0kb upstream 2.0kb upstream 6220   true Chr17: 32190584-32196803 Glycine max
Glyma.17G202200 2.0kb upstream 2.0kb upstream 2000   false Chr17: 32194804-32196803 Glycine max
Glyma.17G202200 2.0kb downstream 2.0kb downstream 6220   true Chr17: 32188584-32194803 Glycine max
Glyma.17G202200 2.0kb downstream 2.0kb downstream 2000   false Chr17: 32188584-32190583 Glycine max
Glyma.17G202200 5.0kb upstream 5.0kb upstream 9220   true Chr17: 32190584-32199803 Glycine max
Glyma.17G202200 5.0kb upstream 5.0kb upstream 5000   false Chr17: 32194804-32199803 Glycine max
Glyma.17G202200 5.0kb downstream 5.0kb downstream 9220   true Chr17: 32185584-32194803 Glycine max
Glyma.17G202200 5.0kb downstream 5.0kb downstream 5000   false Chr17: 32185584-32190583 Glycine max
Glyma.17G202200 10.0kb upstream 10.0kb upstream 14220   true Chr17: 32190584-32204803 Glycine max
Glyma.17G202200 10.0kb upstream 10.0kb upstream 10000   false Chr17: 32194804-32204803 Glycine max
Glyma.17G202200 10.0kb downstream 10.0kb downstream 14220   true Chr17: 32180584-32194803 Glycine max
Glyma.17G202200 10.0kb downstream 10.0kb downstream 10000   false Chr17: 32180584-32190583 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304331 5265 Fabidae View MSA
124063788 5270 Rosid View MSA
123740037 5271 Pentapetalae View MSA
122788776 5272 Eudicot View MSA
122049363 5273 Angiosperm View MSA
121347176 5274 Embryophyte View MSA
123425085 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.47748 0.0 8.38032   Low
cufflinks 26.4397 0.0 70.5445 High High
cufflinks 4.7965 0.0 14.8254    
cufflinks 6.35252 0.0 18.8594    
cufflinks 13.563 0.0 37.1588    
cufflinks 8.53206 0.0 24.4321    
cufflinks 7.69572 0.0 22.3754    
cufflinks 8.50224 0.0 24.3127    
cufflinks 13.4532 0.0 36.8543    
cufflinks 2.335        
cufflinks 0.635       Low
cufflinks 2.203        
cufflinks 5.14       High
cufflinks 5.668       High
cufflinks 0.957        
cufflinks 3.038        
cufflinks 1.266        
cufflinks 1.482        
cufflinks 8.769     High High
cufflinks 1.873        
cufflinks 0.861       Low
cufflinks 2.489        
cufflinks 7.033       High
cufflinks 0.54       Low
cufflinks 2.115        
cufflinks 1.24        

0 Strain