Gene : Glyma.17G196500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11390:SF27 - DNA TOPOISOMERASE Genomic Order:  1965
Name:  ? Glyma.17G196500 Secondary Identifier:  ? PAC:30481057
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G196500 0.5kb upstream 0.5kb upstream 7404   true Chr17: 30748563-30755966 Glycine max
Glyma.17G196500 0.5kb upstream 0.5kb upstream 500   false Chr17: 30755467-30755966 Glycine max
Glyma.17G196500 0.5kb downstream 0.5kb downstream 7404   true Chr17: 30748063-30755466 Glycine max
Glyma.17G196500 0.5kb downstream 0.5kb downstream 500   false Chr17: 30748063-30748562 Glycine max
Glyma.17G196500 1.0kb upstream 1.0kb upstream 7904   true Chr17: 30748563-30756466 Glycine max
Glyma.17G196500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 30755467-30756466 Glycine max
Glyma.17G196500 1.0kb downstream 1.0kb downstream 7904   true Chr17: 30747563-30755466 Glycine max
Glyma.17G196500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 30747563-30748562 Glycine max
Glyma.17G196500 2.0kb upstream 2.0kb upstream 8904   true Chr17: 30748563-30757466 Glycine max
Glyma.17G196500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 30755467-30757466 Glycine max
Glyma.17G196500 2.0kb downstream 2.0kb downstream 8904   true Chr17: 30746563-30755466 Glycine max
Glyma.17G196500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 30746563-30748562 Glycine max
Glyma.17G196500 5.0kb upstream 5.0kb upstream 11904   true Chr17: 30748563-30760466 Glycine max
Glyma.17G196500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 30755467-30760466 Glycine max
Glyma.17G196500 5.0kb downstream 5.0kb downstream 11904   true Chr17: 30743563-30755466 Glycine max
Glyma.17G196500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 30743563-30748562 Glycine max
Glyma.17G196500 10.0kb upstream 10.0kb upstream 16904   true Chr17: 30748563-30765466 Glycine max
Glyma.17G196500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 30755467-30765466 Glycine max
Glyma.17G196500 10.0kb downstream 10.0kb downstream 16904   true Chr17: 30738563-30755466 Glycine max
Glyma.17G196500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 30738563-30748562 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301575 5265 Fabidae View MSA
124062763 5270 Rosid View MSA
123739329 5271 Pentapetalae View MSA
122792755 5272 Eudicot View MSA
122047422 5273 Angiosperm View MSA
121351439 5274 Embryophyte View MSA
123426817 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.06351 0.0 11.4093    
cufflinks 3.27254 0.0 11.96   High
cufflinks 2.35658 0.0 9.54222    
cufflinks 2.63455 0.0 12.3755    
cufflinks 2.79726 0.0 10.6609    
cufflinks 1.49919 0.0 5.38295   Low
cufflinks 2.20227 0.0 9.05543    
cufflinks 2.2904 0.0 9.41807    
cufflinks 2.44035 0.0 9.71094    
cufflinks 0.432        
cufflinks 0.314       Low
cufflinks 0.398        
cufflinks 0.429        
cufflinks 0.526        
cufflinks 0.32       Low
cufflinks 0.748       High
cufflinks 0.393        
cufflinks 0.516        
cufflinks 0.68        
cufflinks 0.731       High
cufflinks 0.278       Low
cufflinks 0.745       High
cufflinks 0.885       High
cufflinks 0.275       Low
cufflinks 0.762       High
cufflinks 0.391        

0 Strain