Gene : Glyma.17G223900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11592:SF11 - PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASE 1, CHLOROPLASTIC-RELATED Genomic Order:  2239
Name:  ? Glyma.17G223900 Secondary Identifier:  ? PAC:30480997
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-4081 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G223900 0.5kb upstream 0.5kb upstream 4695   true Chr17: 37690917-37695611 Glycine max
Glyma.17G223900 0.5kb upstream 0.5kb upstream 500   false Chr17: 37690917-37691416 Glycine max
Glyma.17G223900 0.5kb downstream 0.5kb downstream 4695   true Chr17: 37691417-37696111 Glycine max
Glyma.17G223900 0.5kb downstream 0.5kb downstream 500   false Chr17: 37695612-37696111 Glycine max
Glyma.17G223900 1.0kb upstream 1.0kb upstream 5195   true Chr17: 37690417-37695611 Glycine max
Glyma.17G223900 1.0kb upstream 1.0kb upstream 1000   false Chr17: 37690417-37691416 Glycine max
Glyma.17G223900 1.0kb downstream 1.0kb downstream 5195   true Chr17: 37691417-37696611 Glycine max
Glyma.17G223900 1.0kb downstream 1.0kb downstream 1000   false Chr17: 37695612-37696611 Glycine max
Glyma.17G223900 2.0kb upstream 2.0kb upstream 6195   true Chr17: 37689417-37695611 Glycine max
Glyma.17G223900 2.0kb upstream 2.0kb upstream 2000   false Chr17: 37689417-37691416 Glycine max
Glyma.17G223900 2.0kb downstream 2.0kb downstream 6195   true Chr17: 37691417-37697611 Glycine max
Glyma.17G223900 2.0kb downstream 2.0kb downstream 2000   false Chr17: 37695612-37697611 Glycine max
Glyma.17G223900 5.0kb upstream 5.0kb upstream 9195   true Chr17: 37686417-37695611 Glycine max
Glyma.17G223900 5.0kb upstream 5.0kb upstream 5000   false Chr17: 37686417-37691416 Glycine max
Glyma.17G223900 5.0kb downstream 5.0kb downstream 9195   true Chr17: 37691417-37700611 Glycine max
Glyma.17G223900 5.0kb downstream 5.0kb downstream 5000   false Chr17: 37695612-37700611 Glycine max
Glyma.17G223900 10.0kb upstream 10.0kb upstream 14195   true Chr17: 37681417-37695611 Glycine max
Glyma.17G223900 10.0kb upstream 10.0kb upstream 10000   false Chr17: 37681417-37691416 Glycine max
Glyma.17G223900 10.0kb downstream 10.0kb downstream 14195   true Chr17: 37691417-37705611 Glycine max
Glyma.17G223900 10.0kb downstream 10.0kb downstream 10000   false Chr17: 37695612-37705611 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306864 5265 Fabidae View MSA
124063282 5270 Rosid View MSA
123740898 5271 Pentapetalae View MSA
122792011 5272 Eudicot View MSA
122046042 5273 Angiosperm View MSA
121349724 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 136.967 0.0 518.334 High High
cufflinks 31.2598 0.0 106.449 High  
cufflinks 48.5886 0.0 171.035 High  
cufflinks 38.2348 0.0 131.644 High  
cufflinks 16.5585 0.0 61.5472   Low
cufflinks 36.7132 0.0 127.354 High  
cufflinks 24.7654 0.0 74.2811 High  
cufflinks 35.2939 0.0 120.866 High  
cufflinks 14.0635 0.0 52.0567   Low
cufflinks 4.18        
cufflinks 1.489        
cufflinks 5.388        
cufflinks 2.195        
cufflinks 1.113       Low
cufflinks 0.918       Low
cufflinks 12.234     High High
cufflinks 2.181        
cufflinks 5.019        
cufflinks 4.924        
cufflinks 11.135     High High
cufflinks 1.051       Low
cufflinks 10.461     High High
cufflinks 9.243     High High
cufflinks 1.106       Low
cufflinks 12.665     High High
cufflinks 2.038        

0 Strain