Gene : Glyma.17G238800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12226 - MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED Genomic Order:  2388
Name:  ? Glyma.17G238800 Secondary Identifier:  ? PAC:30480910
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G238800 0.5kb upstream 0.5kb upstream 5335   true Chr17: 39431136-39436470 Glycine max
Glyma.17G238800 0.5kb upstream 0.5kb upstream 500   false Chr17: 39435971-39436470 Glycine max
Glyma.17G238800 0.5kb downstream 0.5kb downstream 5335   true Chr17: 39430636-39435970 Glycine max
Glyma.17G238800 0.5kb downstream 0.5kb downstream 500   false Chr17: 39430636-39431135 Glycine max
Glyma.17G238800 1.0kb upstream 1.0kb upstream 5835   true Chr17: 39431136-39436970 Glycine max
Glyma.17G238800 1.0kb upstream 1.0kb upstream 1000   false Chr17: 39435971-39436970 Glycine max
Glyma.17G238800 1.0kb downstream 1.0kb downstream 5835   true Chr17: 39430136-39435970 Glycine max
Glyma.17G238800 1.0kb downstream 1.0kb downstream 1000   false Chr17: 39430136-39431135 Glycine max
Glyma.17G238800 2.0kb upstream 2.0kb upstream 6835   true Chr17: 39431136-39437970 Glycine max
Glyma.17G238800 2.0kb upstream 2.0kb upstream 2000   false Chr17: 39435971-39437970 Glycine max
Glyma.17G238800 2.0kb downstream 2.0kb downstream 6835   true Chr17: 39429136-39435970 Glycine max
Glyma.17G238800 2.0kb downstream 2.0kb downstream 2000   false Chr17: 39429136-39431135 Glycine max
Glyma.17G238800 5.0kb upstream 5.0kb upstream 9835   true Chr17: 39431136-39440970 Glycine max
Glyma.17G238800 5.0kb upstream 5.0kb upstream 5000   false Chr17: 39435971-39440970 Glycine max
Glyma.17G238800 5.0kb downstream 5.0kb downstream 9835   true Chr17: 39426136-39435970 Glycine max
Glyma.17G238800 5.0kb downstream 5.0kb downstream 5000   false Chr17: 39426136-39431135 Glycine max
Glyma.17G238800 10.0kb upstream 10.0kb upstream 14835   true Chr17: 39431136-39445970 Glycine max
Glyma.17G238800 10.0kb upstream 10.0kb upstream 10000   false Chr17: 39435971-39445970 Glycine max
Glyma.17G238800 10.0kb downstream 10.0kb downstream 14835   true Chr17: 39421136-39435970 Glycine max
Glyma.17G238800 10.0kb downstream 10.0kb downstream 10000   false Chr17: 39421136-39431135 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026177 5273 Angiosperm View MSA
122303925 5265 Fabidae View MSA
124060933 5270 Rosid View MSA
123748760 5271 Pentapetalae View MSA
122789480 5272 Eudicot View MSA
121343943 5274 Embryophyte View MSA
123424211 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.1846 0.0 41.6996    
cufflinks 14.7614 0.0 40.5938    
cufflinks 10.3758 0.0 29.4595   Low
cufflinks 17.5905 0.0 47.8049    
cufflinks 15.6145 0.0 42.7478    
cufflinks 13.609 0.0 37.6397    
cufflinks 23.8126 0.0 63.8468 High High
cufflinks 18.267 0.0 49.4884    
cufflinks 12.5253 0.0 34.8772    
cufflinks 2.559        
cufflinks 0.434       Low
cufflinks 2.118        
cufflinks 3.316       High
cufflinks 3.542       High
cufflinks 0.589       Low
cufflinks 1.39        
cufflinks 1.303        
cufflinks 2.576        
cufflinks 2.615        
cufflinks 1.516        
cufflinks 0.81       Low
cufflinks 1.504        
cufflinks 1.722        
cufflinks 0.909        
cufflinks 1.367        
cufflinks 1.144        

0 Strain