Gene : Glyma.18G011300 G. max Wm82.a2.v1
Defline:  (1 of 25) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  113
Name:  ? Glyma.18G011300 Secondary Identifier:  ? PAC:30557991
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G011300 0.5kb upstream 0.5kb upstream 2025 true Chr18: 797735-799759 Glycine max
Glyma.18G011300 0.5kb upstream 0.5kb upstream 500 false Chr18: 797735-798234 Glycine max
Glyma.18G011300 0.5kb downstream 0.5kb downstream 2025 true Chr18: 798235-800259 Glycine max
Glyma.18G011300 0.5kb downstream 0.5kb downstream 500 false Chr18: 799760-800259 Glycine max
Glyma.18G011300 1.0kb upstream 1.0kb upstream 2525 true Chr18: 797235-799759 Glycine max
Glyma.18G011300 1.0kb upstream 1.0kb upstream 1000 false Chr18: 797235-798234 Glycine max
Glyma.18G011300 1.0kb downstream 1.0kb downstream 2525 true Chr18: 798235-800759 Glycine max
Glyma.18G011300 1.0kb downstream 1.0kb downstream 1000 false Chr18: 799760-800759 Glycine max
Glyma.18G011300 2.0kb upstream 2.0kb upstream 3525 true Chr18: 796235-799759 Glycine max
Glyma.18G011300 2.0kb upstream 2.0kb upstream 2000 false Chr18: 796235-798234 Glycine max
Glyma.18G011300 2.0kb downstream 2.0kb downstream 3525 true Chr18: 798235-801759 Glycine max
Glyma.18G011300 2.0kb downstream 2.0kb downstream 2000 false Chr18: 799760-801759 Glycine max
Glyma.18G011300 5.0kb upstream 5.0kb upstream 6525 true Chr18: 793235-799759 Glycine max
Glyma.18G011300 5.0kb upstream 5.0kb upstream 5000 false Chr18: 793235-798234 Glycine max
Glyma.18G011300 5.0kb downstream 5.0kb downstream 6525 true Chr18: 798235-804759 Glycine max
Glyma.18G011300 5.0kb downstream 5.0kb downstream 5000 false Chr18: 799760-804759 Glycine max
Glyma.18G011300 10.0kb upstream 10.0kb upstream 11525 true Chr18: 788235-799759 Glycine max
Glyma.18G011300 10.0kb upstream 10.0kb upstream 10000 false Chr18: 788235-798234 Glycine max
Glyma.18G011300 10.0kb downstream 10.0kb downstream 11525 true Chr18: 798235-809759 Glycine max
Glyma.18G011300 10.0kb downstream 10.0kb downstream 10000 false Chr18: 799760-809759 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298040 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.31948 0.0 6.54543    
cufflinks 6.00979 0.0 31.4112    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.16782 0.0 0.688784 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.03     Low  
cufflinks 0.006     Low Low
cufflinks 0.316       High
cufflinks 0.005     Low Low
cufflinks 0.017     Low  
cufflinks 0.04     Low  
cufflinks 0.035     Low  
cufflinks 0.022     Low  
cufflinks 0.553       High
cufflinks 0.206       High
cufflinks 0.006     Low Low
cufflinks 0.021     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.007     Low  
cufflinks 0.032     Low  
cufflinks 0.008     Low  

0 Strain