Gene : Glyma.18G000600 G. max Wm82.a2.v1
Defline:  (1 of 9) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  6
Name:  ? Glyma.18G000600 Secondary Identifier:  ? PAC:30556708
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CAROTENOID-PWY Glycine max pathologic  
Gmax PWY-6475 Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G000600 0.5kb upstream 0.5kb upstream 2897 true Chr18: 98610-101506 Glycine max
Glyma.18G000600 0.5kb upstream 0.5kb upstream 500 false Chr18: 98610-99109 Glycine max
Glyma.18G000600 0.5kb downstream 0.5kb downstream 2897 true Chr18: 99110-102006 Glycine max
Glyma.18G000600 0.5kb downstream 0.5kb downstream 500 false Chr18: 101507-102006 Glycine max
Glyma.18G000600 1.0kb upstream 1.0kb upstream 3397 true Chr18: 98110-101506 Glycine max
Glyma.18G000600 1.0kb upstream 1.0kb upstream 1000 false Chr18: 98110-99109 Glycine max
Glyma.18G000600 1.0kb downstream 1.0kb downstream 3397 true Chr18: 99110-102506 Glycine max
Glyma.18G000600 1.0kb downstream 1.0kb downstream 1000 false Chr18: 101507-102506 Glycine max
Glyma.18G000600 2.0kb upstream 2.0kb upstream 4397 true Chr18: 97110-101506 Glycine max
Glyma.18G000600 2.0kb upstream 2.0kb upstream 2000 false Chr18: 97110-99109 Glycine max
Glyma.18G000600 2.0kb downstream 2.0kb downstream 4397 true Chr18: 99110-103506 Glycine max
Glyma.18G000600 2.0kb downstream 2.0kb downstream 2000 false Chr18: 101507-103506 Glycine max
Glyma.18G000600 5.0kb upstream 5.0kb upstream 7397 true Chr18: 94110-101506 Glycine max
Glyma.18G000600 5.0kb upstream 5.0kb upstream 5000 false Chr18: 94110-99109 Glycine max
Glyma.18G000600 5.0kb downstream 5.0kb downstream 7397 true Chr18: 99110-106506 Glycine max
Glyma.18G000600 5.0kb downstream 5.0kb downstream 5000 false Chr18: 101507-106506 Glycine max
Glyma.18G000600 10.0kb upstream 10.0kb upstream 12397 true Chr18: 89110-101506 Glycine max
Glyma.18G000600 10.0kb upstream 10.0kb upstream 10000 false Chr18: 89110-99109 Glycine max
Glyma.18G000600 10.0kb downstream 10.0kb downstream 12397 true Chr18: 99110-111506 Glycine max
Glyma.18G000600 10.0kb downstream 10.0kb downstream 10000 false Chr18: 101507-111506 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791897 5273 Angiosperm View MSA
122301040 5265 Fabidae View MSA
124070779 5270 Rosid View MSA
123742301 5271 Pentapetalae View MSA
122795137 5272 Eudicot View MSA
121063168 5274 Embryophyte View MSA
123102943 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.110831 0.0 0.437675 Low  
cufflinks 0.0618809 0.0 0.249405 Low  
cufflinks 3.09496 0.0 9.6067   High
cufflinks 0.262281 0.0 1.00085    
cufflinks 2.52879 0.0 8.08645   High
cufflinks 0.0569744 0.0 0.231112 Low  
cufflinks 0.0630721 0.0 0.254437 Low  
cufflinks 0.648095 0.0 2.36561    
cufflinks 0.077     Low  
cufflinks 0.016     Low  
cufflinks 0.132       High
cufflinks 0.087     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.064     Low  
cufflinks 0.076     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.119        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain