Gene : Glyma.18G054400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21242 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10 Genomic Order:  544
Name:  ? Glyma.18G054400 Secondary Identifier:  ? PAC:30556848
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G054400 0.5kb upstream 0.5kb upstream 3484 true Chr18: 4717080-4720563 Glycine max
Glyma.18G054400 0.5kb upstream 0.5kb upstream 500 false Chr18: 4717080-4717579 Glycine max
Glyma.18G054400 0.5kb downstream 0.5kb downstream 3484 true Chr18: 4717580-4721063 Glycine max
Glyma.18G054400 0.5kb downstream 0.5kb downstream 500 false Chr18: 4720564-4721063 Glycine max
Glyma.18G054400 1.0kb upstream 1.0kb upstream 3984 true Chr18: 4716580-4720563 Glycine max
Glyma.18G054400 1.0kb upstream 1.0kb upstream 1000 false Chr18: 4716580-4717579 Glycine max
Glyma.18G054400 1.0kb downstream 1.0kb downstream 3984 true Chr18: 4717580-4721563 Glycine max
Glyma.18G054400 1.0kb downstream 1.0kb downstream 1000 false Chr18: 4720564-4721563 Glycine max
Glyma.18G054400 2.0kb upstream 2.0kb upstream 4984 true Chr18: 4715580-4720563 Glycine max
Glyma.18G054400 2.0kb upstream 2.0kb upstream 2000 false Chr18: 4715580-4717579 Glycine max
Glyma.18G054400 2.0kb downstream 2.0kb downstream 4984 true Chr18: 4717580-4722563 Glycine max
Glyma.18G054400 2.0kb downstream 2.0kb downstream 2000 false Chr18: 4720564-4722563 Glycine max
Glyma.18G054400 5.0kb upstream 5.0kb upstream 7984 true Chr18: 4712580-4720563 Glycine max
Glyma.18G054400 5.0kb upstream 5.0kb upstream 5000 false Chr18: 4712580-4717579 Glycine max
Glyma.18G054400 5.0kb downstream 5.0kb downstream 7984 true Chr18: 4717580-4725563 Glycine max
Glyma.18G054400 5.0kb downstream 5.0kb downstream 5000 false Chr18: 4720564-4725563 Glycine max
Glyma.18G054400 10.0kb upstream 10.0kb upstream 12984 true Chr18: 4707580-4720563 Glycine max
Glyma.18G054400 10.0kb upstream 10.0kb upstream 10000 false Chr18: 4707580-4717579 Glycine max
Glyma.18G054400 10.0kb downstream 10.0kb downstream 12984 true Chr18: 4717580-4730563 Glycine max
Glyma.18G054400 10.0kb downstream 10.0kb downstream 10000 false Chr18: 4720564-4730563 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300885 5265 Fabidae View MSA
124061135 5270 Rosid View MSA
123740018 5271 Pentapetalae View MSA
122796575 5272 Eudicot View MSA
122043600 5273 Angiosperm View MSA
121344919 5274 Embryophyte View MSA
123424848 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.2796 0.0 45.403   Low
cufflinks 23.0161 0.0 62.4942 High  
cufflinks 24.3231 0.0 65.8645 High  
cufflinks 25.3735 0.0 68.4801 High  
cufflinks 20.3129 0.0 55.5128 High  
cufflinks 27.1705 0.0 73.1567 High  
cufflinks 35.2287 0.0 94.1035 High High
cufflinks 22.413 0.0 60.8409 High  
cufflinks 25.2321 0.0 68.1192 High  
cufflinks 3.287        
cufflinks 4.016        
cufflinks 4.735        
cufflinks 3.502        
cufflinks 4.212        
cufflinks 4.912        
cufflinks 4.618        
cufflinks 2.448       Low
cufflinks 4.219        
cufflinks 3.079       Low
cufflinks 6.258       High
cufflinks 3.727        
cufflinks 5.128       High
cufflinks 2.717       Low
cufflinks 4.161        
cufflinks 5.218       High
cufflinks 3.123        

0 Strain