Gene : Glyma.18G039200 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR16223:SF19 - TRANSCRIPTION FACTOR BHLH83-RELATED Genomic Order:  392
Name:  ? Glyma.18G039200 Secondary Identifier:  ? PAC:30555444
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G039200 0.5kb upstream 0.5kb upstream 2340 true Chr18: 3182661-3185000 Glycine max
Glyma.18G039200 0.5kb upstream 0.5kb upstream 500 false Chr18: 3184501-3185000 Glycine max
Glyma.18G039200 0.5kb downstream 0.5kb downstream 2340 true Chr18: 3182161-3184500 Glycine max
Glyma.18G039200 0.5kb downstream 0.5kb downstream 500 false Chr18: 3182161-3182660 Glycine max
Glyma.18G039200 1.0kb upstream 1.0kb upstream 2840 true Chr18: 3182661-3185500 Glycine max
Glyma.18G039200 1.0kb upstream 1.0kb upstream 1000 false Chr18: 3184501-3185500 Glycine max
Glyma.18G039200 1.0kb downstream 1.0kb downstream 2840 true Chr18: 3181661-3184500 Glycine max
Glyma.18G039200 1.0kb downstream 1.0kb downstream 1000 false Chr18: 3181661-3182660 Glycine max
Glyma.18G039200 2.0kb upstream 2.0kb upstream 3840 true Chr18: 3182661-3186500 Glycine max
Glyma.18G039200 2.0kb upstream 2.0kb upstream 2000 false Chr18: 3184501-3186500 Glycine max
Glyma.18G039200 2.0kb downstream 2.0kb downstream 3840 true Chr18: 3180661-3184500 Glycine max
Glyma.18G039200 2.0kb downstream 2.0kb downstream 2000 false Chr18: 3180661-3182660 Glycine max
Glyma.18G039200 5.0kb upstream 5.0kb upstream 6840 true Chr18: 3182661-3189500 Glycine max
Glyma.18G039200 5.0kb upstream 5.0kb upstream 5000 false Chr18: 3184501-3189500 Glycine max
Glyma.18G039200 5.0kb downstream 5.0kb downstream 6840 true Chr18: 3177661-3184500 Glycine max
Glyma.18G039200 5.0kb downstream 5.0kb downstream 5000 false Chr18: 3177661-3182660 Glycine max
Glyma.18G039200 10.0kb upstream 10.0kb upstream 11840 true Chr18: 3182661-3194500 Glycine max
Glyma.18G039200 10.0kb upstream 10.0kb upstream 10000 false Chr18: 3184501-3194500 Glycine max
Glyma.18G039200 10.0kb downstream 10.0kb downstream 11840 true Chr18: 3172661-3184500 Glycine max
Glyma.18G039200 10.0kb downstream 10.0kb downstream 10000 false Chr18: 3172661-3182660 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311465 5265 Fabidae View MSA
124064521 5270 Rosid View MSA
123740675 5271 Pentapetalae View MSA
122794113 5272 Eudicot View MSA
122049843 5273 Angiosperm View MSA
121311613 5274 Embryophyte View MSA
123348888 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0153995 0.0 0.0696446 Low Low
cufflinks 0.0295264 0.0 0.126117 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.195461 0.0 0.760409    
cufflinks 3.34434 0.0 10.5587   High
cufflinks 6.50673 0.0 18.7474   High
cufflinks 0.364976 0.0 1.38369    
cufflinks 0.235869 0.0 0.909993    
cufflinks 1.05844 0.0 3.78538    
cufflinks 0.009     Low Low
cufflinks 0.16        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.288       High
cufflinks 4.327       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.158        
cufflinks 0.051     Low  
cufflinks 0.036     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.048     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.223        

0 Strain