Gene : Glyma.18G116400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31339:SF3 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  1164
Name:  ? Glyma.18G116400 Secondary Identifier:  ? PAC:30554833
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G116400 0.5kb upstream 0.5kb upstream 5779 true Chr18: 14247125-14252903 Glycine max
Glyma.18G116400 0.5kb upstream 0.5kb upstream 500 false Chr18: 14247125-14247624 Glycine max
Glyma.18G116400 0.5kb downstream 0.5kb downstream 5779 true Chr18: 14247625-14253403 Glycine max
Glyma.18G116400 0.5kb downstream 0.5kb downstream 500 false Chr18: 14252904-14253403 Glycine max
Glyma.18G116400 1.0kb upstream 1.0kb upstream 6279 true Chr18: 14246625-14252903 Glycine max
Glyma.18G116400 1.0kb upstream 1.0kb upstream 1000 false Chr18: 14246625-14247624 Glycine max
Glyma.18G116400 1.0kb downstream 1.0kb downstream 6279 true Chr18: 14247625-14253903 Glycine max
Glyma.18G116400 1.0kb downstream 1.0kb downstream 1000 false Chr18: 14252904-14253903 Glycine max
Glyma.18G116400 2.0kb upstream 2.0kb upstream 7279 true Chr18: 14245625-14252903 Glycine max
Glyma.18G116400 2.0kb upstream 2.0kb upstream 2000 false Chr18: 14245625-14247624 Glycine max
Glyma.18G116400 2.0kb downstream 2.0kb downstream 7279 true Chr18: 14247625-14254903 Glycine max
Glyma.18G116400 2.0kb downstream 2.0kb downstream 2000 false Chr18: 14252904-14254903 Glycine max
Glyma.18G116400 5.0kb upstream 5.0kb upstream 10279 true Chr18: 14242625-14252903 Glycine max
Glyma.18G116400 5.0kb upstream 5.0kb upstream 5000 false Chr18: 14242625-14247624 Glycine max
Glyma.18G116400 5.0kb downstream 5.0kb downstream 10279 true Chr18: 14247625-14257903 Glycine max
Glyma.18G116400 5.0kb downstream 5.0kb downstream 5000 false Chr18: 14252904-14257903 Glycine max
Glyma.18G116400 10.0kb upstream 10.0kb upstream 15279 true Chr18: 14237625-14252903 Glycine max
Glyma.18G116400 10.0kb upstream 10.0kb upstream 10000 false Chr18: 14237625-14247624 Glycine max
Glyma.18G116400 10.0kb downstream 10.0kb downstream 15279 true Chr18: 14247625-14262903 Glycine max
Glyma.18G116400 10.0kb downstream 10.0kb downstream 10000 false Chr18: 14252904-14262903 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309938 5265 Fabidae View MSA
124068790 5270 Rosid View MSA
123750748 5271 Pentapetalae View MSA
122786730 5272 Eudicot View MSA
122043550 5273 Angiosperm View MSA
121310146 5274 Embryophyte View MSA
123347715 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.23284 0.0 27.5445    
cufflinks 21.4503 0.0 90.6302 High  
cufflinks 5.17942 0.0 26.3438    
cufflinks 17.8503 0.0 76.402    
cufflinks 18.4065 0.0 78.7874    
cufflinks 12.9287 0.0 51.5406    
cufflinks 3.14132 0.0 16.8581   Low
cufflinks 36.6089 0.0 161.554 High High
cufflinks 8.60412 0.0 37.6169    
cufflinks 11.353     High High
cufflinks 0.199       Low
cufflinks 1.261        
cufflinks 2.033        
cufflinks 1.959        
cufflinks 0.807        
cufflinks 5.291        
cufflinks 0.776        
cufflinks 3.31        
cufflinks 2.638        
cufflinks 4.645        
cufflinks 0.432        
cufflinks 4.726        
cufflinks 5.551        
cufflinks 0.112       Low
cufflinks 4.806        
cufflinks 0.337       Low

0 Strain