Gene : Glyma.18G102800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10314:SF98 - TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED Genomic Order:  1028
Name:  ? Glyma.18G102800 Secondary Identifier:  ? PAC:30557922
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRPSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G102800 0.5kb upstream 0.5kb upstream 4911 true Chr18: 10940609-10945519 Glycine max
Glyma.18G102800 0.5kb upstream 0.5kb upstream 500 false Chr18: 10945020-10945519 Glycine max
Glyma.18G102800 0.5kb downstream 0.5kb downstream 4911 true Chr18: 10940109-10945019 Glycine max
Glyma.18G102800 0.5kb downstream 0.5kb downstream 500 false Chr18: 10940109-10940608 Glycine max
Glyma.18G102800 1.0kb upstream 1.0kb upstream 5411 true Chr18: 10940609-10946019 Glycine max
Glyma.18G102800 1.0kb upstream 1.0kb upstream 1000 false Chr18: 10945020-10946019 Glycine max
Glyma.18G102800 1.0kb downstream 1.0kb downstream 5411 true Chr18: 10939609-10945019 Glycine max
Glyma.18G102800 1.0kb downstream 1.0kb downstream 1000 false Chr18: 10939609-10940608 Glycine max
Glyma.18G102800 2.0kb upstream 2.0kb upstream 6411 true Chr18: 10940609-10947019 Glycine max
Glyma.18G102800 2.0kb upstream 2.0kb upstream 2000 false Chr18: 10945020-10947019 Glycine max
Glyma.18G102800 2.0kb downstream 2.0kb downstream 6411 true Chr18: 10938609-10945019 Glycine max
Glyma.18G102800 2.0kb downstream 2.0kb downstream 2000 false Chr18: 10938609-10940608 Glycine max
Glyma.18G102800 5.0kb upstream 5.0kb upstream 9411 true Chr18: 10940609-10950019 Glycine max
Glyma.18G102800 5.0kb upstream 5.0kb upstream 5000 false Chr18: 10945020-10950019 Glycine max
Glyma.18G102800 5.0kb downstream 5.0kb downstream 9411 true Chr18: 10935609-10945019 Glycine max
Glyma.18G102800 5.0kb downstream 5.0kb downstream 5000 false Chr18: 10935609-10940608 Glycine max
Glyma.18G102800 10.0kb upstream 10.0kb upstream 14411 true Chr18: 10940609-10955019 Glycine max
Glyma.18G102800 10.0kb upstream 10.0kb upstream 10000 false Chr18: 10945020-10955019 Glycine max
Glyma.18G102800 10.0kb downstream 10.0kb downstream 14411 true Chr18: 10930609-10945019 Glycine max
Glyma.18G102800 10.0kb downstream 10.0kb downstream 10000 false Chr18: 10930609-10940608 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304210 5265 Fabidae View MSA
124062384 5270 Rosid View MSA
123745831 5271 Pentapetalae View MSA
122787401 5272 Eudicot View MSA
122044231 5273 Angiosperm View MSA
121344651 5274 Embryophyte View MSA
123423776 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.21161 0.0 19.8199   Low
cufflinks 13.1791 0.0 35.2187    
cufflinks 6.7423 0.0 18.6008   Low
cufflinks 9.65621 0.0 26.0543    
cufflinks 12.5083 0.0 33.4532    
cufflinks 12.4389 0.0 33.2662    
cufflinks 14.3114 0.0 38.1961   High
cufflinks 8.55273 0.0 23.2369    
cufflinks 8.89816 0.0 24.1115    
cufflinks 4.897        
cufflinks 1.891       Low
cufflinks 4.701        
cufflinks 8.103     High High
cufflinks 9.726     High High
cufflinks 1.687       Low
cufflinks 5.188        
cufflinks 2.45        
cufflinks 6.81        
cufflinks 8.797     High High
cufflinks 5.328        
cufflinks 1.97       Low
cufflinks 6.124        
cufflinks 6.929        
cufflinks 2.136       Low
cufflinks 4.909        
cufflinks 2.286       Low

0 Strain