Gene : Glyma.18G166800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR33159:SF6 - RPM1-INTERACTING PROTEIN 4 Genomic Order:  1668
Name:  ? Glyma.18G166800 Secondary Identifier:  ? PAC:30558690
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G166800 0.5kb upstream 0.5kb upstream 5663 true Chr18: 39062647-39068309 Glycine max
Glyma.18G166800 0.5kb upstream 0.5kb upstream 500 false Chr18: 39062647-39063146 Glycine max
Glyma.18G166800 0.5kb downstream 0.5kb downstream 5663 true Chr18: 39063147-39068809 Glycine max
Glyma.18G166800 0.5kb downstream 0.5kb downstream 500 false Chr18: 39068310-39068809 Glycine max
Glyma.18G166800 1.0kb upstream 1.0kb upstream 6163 true Chr18: 39062147-39068309 Glycine max
Glyma.18G166800 1.0kb upstream 1.0kb upstream 1000 false Chr18: 39062147-39063146 Glycine max
Glyma.18G166800 1.0kb downstream 1.0kb downstream 6163 true Chr18: 39063147-39069309 Glycine max
Glyma.18G166800 1.0kb downstream 1.0kb downstream 1000 false Chr18: 39068310-39069309 Glycine max
Glyma.18G166800 2.0kb upstream 2.0kb upstream 7163 true Chr18: 39061147-39068309 Glycine max
Glyma.18G166800 2.0kb upstream 2.0kb upstream 2000 false Chr18: 39061147-39063146 Glycine max
Glyma.18G166800 2.0kb downstream 2.0kb downstream 7163 true Chr18: 39063147-39070309 Glycine max
Glyma.18G166800 2.0kb downstream 2.0kb downstream 2000 false Chr18: 39068310-39070309 Glycine max
Glyma.18G166800 5.0kb upstream 5.0kb upstream 10163 true Chr18: 39058147-39068309 Glycine max
Glyma.18G166800 5.0kb upstream 5.0kb upstream 5000 false Chr18: 39058147-39063146 Glycine max
Glyma.18G166800 5.0kb downstream 5.0kb downstream 10163 true Chr18: 39063147-39073309 Glycine max
Glyma.18G166800 5.0kb downstream 5.0kb downstream 5000 false Chr18: 39068310-39073309 Glycine max
Glyma.18G166800 10.0kb upstream 10.0kb upstream 15163 true Chr18: 39053147-39068309 Glycine max
Glyma.18G166800 10.0kb upstream 10.0kb upstream 10000 false Chr18: 39053147-39063146 Glycine max
Glyma.18G166800 10.0kb downstream 10.0kb downstream 15163 true Chr18: 39063147-39078309 Glycine max
Glyma.18G166800 10.0kb downstream 10.0kb downstream 10000 false Chr18: 39068310-39078309 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311528 5265 Fabidae View MSA
124074816 5270 Rosid View MSA
123749229 5271 Pentapetalae View MSA
122795391 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.4591 0.0 46.788   High
cufflinks 12.431 0.0 33.8443    
cufflinks 9.83913 0.0 27.2479   Low
cufflinks 13.6151 0.0 36.8416    
cufflinks 13.2531 0.0 35.9422    
cufflinks 14.1729 0.0 38.3184    
cufflinks 12.7754 0.0 34.7072    
cufflinks 19.1941 0.0 51.2907   High
cufflinks 15.5862 0.0 41.9285    
cufflinks 7.209        
cufflinks 7.222     High  
cufflinks 2.945       Low
cufflinks 3.822        
cufflinks 2.68       Low
cufflinks 5.992     High  
cufflinks 5.409        
cufflinks 18.203     High High
cufflinks 3.799        
cufflinks 4.341        
cufflinks 5.802        
cufflinks 7.442     High  
cufflinks 5.791        
cufflinks 4.407        
cufflinks 6.677     High  
cufflinks 5.744        
cufflinks 9.677     High High

0 Strain