Gene : Glyma.18G150000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  1500
Name:  ? Glyma.18G150000 Secondary Identifier:  ? PAC:30554705
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYSYN-PWY Glycine max pathologic  
Gmax PWY-2161 Glycine max pathologic  
Gmax PWY-3841 Glycine max pathologic  
Gmax SER-GLYSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G150000 0.5kb upstream 0.5kb upstream 6452 true Chr18: 27237675-27244126 Glycine max
Glyma.18G150000 0.5kb upstream 0.5kb upstream 500 false Chr18: 27243627-27244126 Glycine max
Glyma.18G150000 0.5kb downstream 0.5kb downstream 6452 true Chr18: 27237175-27243626 Glycine max
Glyma.18G150000 0.5kb downstream 0.5kb downstream 500 false Chr18: 27237175-27237674 Glycine max
Glyma.18G150000 1.0kb upstream 1.0kb upstream 6952 true Chr18: 27237675-27244626 Glycine max
Glyma.18G150000 1.0kb upstream 1.0kb upstream 1000 false Chr18: 27243627-27244626 Glycine max
Glyma.18G150000 1.0kb downstream 1.0kb downstream 6952 true Chr18: 27236675-27243626 Glycine max
Glyma.18G150000 1.0kb downstream 1.0kb downstream 1000 false Chr18: 27236675-27237674 Glycine max
Glyma.18G150000 2.0kb upstream 2.0kb upstream 7952 true Chr18: 27237675-27245626 Glycine max
Glyma.18G150000 2.0kb upstream 2.0kb upstream 2000 false Chr18: 27243627-27245626 Glycine max
Glyma.18G150000 2.0kb downstream 2.0kb downstream 7952 true Chr18: 27235675-27243626 Glycine max
Glyma.18G150000 2.0kb downstream 2.0kb downstream 2000 false Chr18: 27235675-27237674 Glycine max
Glyma.18G150000 5.0kb upstream 5.0kb upstream 10952 true Chr18: 27237675-27248626 Glycine max
Glyma.18G150000 5.0kb upstream 5.0kb upstream 5000 false Chr18: 27243627-27248626 Glycine max
Glyma.18G150000 5.0kb downstream 5.0kb downstream 10952 true Chr18: 27232675-27243626 Glycine max
Glyma.18G150000 5.0kb downstream 5.0kb downstream 5000 false Chr18: 27232675-27237674 Glycine max
Glyma.18G150000 10.0kb upstream 10.0kb upstream 15952 true Chr18: 27237675-27253626 Glycine max
Glyma.18G150000 10.0kb upstream 10.0kb upstream 10000 false Chr18: 27243627-27253626 Glycine max
Glyma.18G150000 10.0kb downstream 10.0kb downstream 15952 true Chr18: 27227675-27243626 Glycine max
Glyma.18G150000 10.0kb downstream 10.0kb downstream 10000 false Chr18: 27227675-27237674 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314119 5265 Fabidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 225.84 0.0 943.123 High High
cufflinks 34.608 0.0 97.3809 High  
cufflinks 21.9177 0.0 59.4657 High  
cufflinks 34.0075 0.0 95.5683 High  
cufflinks 5.79728 0.0 15.988    
cufflinks 2.31534 0.0 7.11902   Low
cufflinks 15.4058 0.0 41.1586    
cufflinks 41.6314 0.0 120.01 High  
cufflinks 3.56297 0.0 10.3233   Low
cufflinks 9.724     High  
cufflinks 0.469        
cufflinks 6.851        
cufflinks 0.227       Low
cufflinks 0.337        
cufflinks 2.71        
cufflinks 72.01     High High
cufflinks 0.149       Low
cufflinks 10.015     High  
cufflinks 12.868     High  
cufflinks 87.067     High High
cufflinks 0.195       Low
cufflinks 73.728     High High
cufflinks 46.991     High High
cufflinks 0.238       Low
cufflinks 84.54     High High
cufflinks 0.152       Low

0 Strain