Gene : Glyma.18G139900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31375:SF46 - PECTIN LYASE-LIKE PROTEIN Genomic Order:  1399
Name:  ? Glyma.18G139900 Secondary Identifier:  ? PAC:30554885
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1081 Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G139900 0.5kb upstream 0.5kb upstream 6560 true Chr18: 21122701-21129260 Glycine max
Glyma.18G139900 0.5kb upstream 0.5kb upstream 500 false Chr18: 21122701-21123200 Glycine max
Glyma.18G139900 0.5kb downstream 0.5kb downstream 6560 true Chr18: 21123201-21129760 Glycine max
Glyma.18G139900 0.5kb downstream 0.5kb downstream 500 false Chr18: 21129261-21129760 Glycine max
Glyma.18G139900 1.0kb upstream 1.0kb upstream 7060 true Chr18: 21122201-21129260 Glycine max
Glyma.18G139900 1.0kb upstream 1.0kb upstream 1000 false Chr18: 21122201-21123200 Glycine max
Glyma.18G139900 1.0kb downstream 1.0kb downstream 7060 true Chr18: 21123201-21130260 Glycine max
Glyma.18G139900 1.0kb downstream 1.0kb downstream 1000 false Chr18: 21129261-21130260 Glycine max
Glyma.18G139900 2.0kb upstream 2.0kb upstream 8060 true Chr18: 21121201-21129260 Glycine max
Glyma.18G139900 2.0kb upstream 2.0kb upstream 2000 false Chr18: 21121201-21123200 Glycine max
Glyma.18G139900 2.0kb downstream 2.0kb downstream 8060 true Chr18: 21123201-21131260 Glycine max
Glyma.18G139900 2.0kb downstream 2.0kb downstream 2000 false Chr18: 21129261-21131260 Glycine max
Glyma.18G139900 5.0kb upstream 5.0kb upstream 11060 true Chr18: 21118201-21129260 Glycine max
Glyma.18G139900 5.0kb upstream 5.0kb upstream 5000 false Chr18: 21118201-21123200 Glycine max
Glyma.18G139900 5.0kb downstream 5.0kb downstream 11060 true Chr18: 21123201-21134260 Glycine max
Glyma.18G139900 5.0kb downstream 5.0kb downstream 5000 false Chr18: 21129261-21134260 Glycine max
Glyma.18G139900 10.0kb upstream 10.0kb upstream 16060 true Chr18: 21113201-21129260 Glycine max
Glyma.18G139900 10.0kb upstream 10.0kb upstream 10000 false Chr18: 21113201-21123200 Glycine max
Glyma.18G139900 10.0kb downstream 10.0kb downstream 16060 true Chr18: 21123201-21139260 Glycine max
Glyma.18G139900 10.0kb downstream 10.0kb downstream 10000 false Chr18: 21129261-21139260 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302874 5265 Fabidae View MSA
124069047 5270 Rosid View MSA
123746876 5271 Pentapetalae View MSA
122793930 5272 Eudicot View MSA
122049793 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.211019 0.0 1.01883 Low Low
cufflinks 2.35375 0.0 13.8281    
cufflinks 0.606628 0.0 3.55914    
cufflinks 16.23 0.0 69.8113   High
cufflinks 1.33138 0.0 7.94084    
cufflinks 0.714518 0.0 4.23251    
cufflinks 12.0812 0.0 47.3701   High
cufflinks 1.91582 0.0 11.4382    
cufflinks 3.03395 0.0 13.7062    
cufflinks 0.221        
cufflinks 0.002     Low Low
cufflinks 0.354        
cufflinks 0.061     Low  
cufflinks 0.168        
cufflinks 0.041     Low  
cufflinks 1.789        
cufflinks 0.008     Low Low
cufflinks 0.946        
cufflinks 0.81        
cufflinks 1.915       High
cufflinks 0.004     Low Low
cufflinks 1.929       High
cufflinks 3.88       High
cufflinks 0.007     Low Low
cufflinks 2.444       High
cufflinks 0.007     Low Low

0 Strain