Gene : Glyma.18G132700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR20978:SF0 - SPLICING FACTOR 3B SUBUNIT 5 Genomic Order:  1327
Name:  ? Glyma.18G132700 Secondary Identifier:  ? PAC:30558602
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G132700 0.5kb upstream 0.5kb upstream 2929 true Chr18: 18660057-18662985 Glycine max
Glyma.18G132700 0.5kb upstream 0.5kb upstream 500 false Chr18: 18660057-18660556 Glycine max
Glyma.18G132700 0.5kb downstream 0.5kb downstream 2929 true Chr18: 18660557-18663485 Glycine max
Glyma.18G132700 0.5kb downstream 0.5kb downstream 500 false Chr18: 18662986-18663485 Glycine max
Glyma.18G132700 1.0kb upstream 1.0kb upstream 3429 true Chr18: 18659557-18662985 Glycine max
Glyma.18G132700 1.0kb upstream 1.0kb upstream 1000 false Chr18: 18659557-18660556 Glycine max
Glyma.18G132700 1.0kb downstream 1.0kb downstream 3429 true Chr18: 18660557-18663985 Glycine max
Glyma.18G132700 1.0kb downstream 1.0kb downstream 1000 false Chr18: 18662986-18663985 Glycine max
Glyma.18G132700 2.0kb upstream 2.0kb upstream 4429 true Chr18: 18658557-18662985 Glycine max
Glyma.18G132700 2.0kb upstream 2.0kb upstream 2000 false Chr18: 18658557-18660556 Glycine max
Glyma.18G132700 2.0kb downstream 2.0kb downstream 4429 true Chr18: 18660557-18664985 Glycine max
Glyma.18G132700 2.0kb downstream 2.0kb downstream 2000 false Chr18: 18662986-18664985 Glycine max
Glyma.18G132700 5.0kb upstream 5.0kb upstream 7429 true Chr18: 18655557-18662985 Glycine max
Glyma.18G132700 5.0kb upstream 5.0kb upstream 5000 false Chr18: 18655557-18660556 Glycine max
Glyma.18G132700 5.0kb downstream 5.0kb downstream 7429 true Chr18: 18660557-18667985 Glycine max
Glyma.18G132700 5.0kb downstream 5.0kb downstream 5000 false Chr18: 18662986-18667985 Glycine max
Glyma.18G132700 10.0kb upstream 10.0kb upstream 12429 true Chr18: 18650557-18662985 Glycine max
Glyma.18G132700 10.0kb upstream 10.0kb upstream 10000 false Chr18: 18650557-18660556 Glycine max
Glyma.18G132700 10.0kb downstream 10.0kb downstream 12429 true Chr18: 18660557-18672985 Glycine max
Glyma.18G132700 10.0kb downstream 10.0kb downstream 10000 false Chr18: 18662986-18672985 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027648 5273 Angiosperm View MSA
122312316 5265 Fabidae View MSA
124069097 5270 Rosid View MSA
123746421 5271 Pentapetalae View MSA
122791090 5272 Eudicot View MSA
123428927 5275 Viridiplantae View MSA
121347588 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 49.0266 0.0 131.049 High  
cufflinks 74.1549 0.0 198.468 High  
cufflinks 60.4734 0.0 161.414 High  
cufflinks 43.4532 0.0 116.422 High  
cufflinks 48.5655 0.0 129.82 High  
cufflinks 46.1209 0.0 123.383 High  
cufflinks 142.325 0.0 395.192 High High
cufflinks 55.3625 0.0 147.709 High  
cufflinks 47.7264 0.0 127.546 High  
cufflinks 7.338        
cufflinks 6.279     High Low
cufflinks 11.346     High  
cufflinks 10.552     High  
cufflinks 15.278     High High
cufflinks 5.32     High Low
cufflinks 10.213     High  
cufflinks 7.351     High  
cufflinks 13.522     High High
cufflinks 11.715     High  
cufflinks 11.475     High  
cufflinks 5.709       Low
cufflinks 11.819     High  
cufflinks 12.429     High  
cufflinks 6.987     High  
cufflinks 11.323     High  
cufflinks 6.399     High Low

0 Strain