Gene : Glyma.18G137100 G. max Wm82.a2.v1
Defline:  (1 of 16) 2.5.1.16 - Spermidine synthase / Putrescine aminopropyltransferase Genomic Order:  1371
Name:  ? Glyma.18G137100 Secondary Identifier:  ? PAC:30555627
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax BSUBPOLYAMSYN-PWY Glycine max pathologic  
Gmax POLYAMINSYN3-PWY Glycine max pathologic  
Gmax PWY-7528 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G137100 0.5kb upstream 0.5kb upstream 4985 true Chr18: 20118109-20123093 Glycine max
Glyma.18G137100 0.5kb upstream 0.5kb upstream 500 false Chr18: 20122594-20123093 Glycine max
Glyma.18G137100 0.5kb downstream 0.5kb downstream 4985 true Chr18: 20117609-20122593 Glycine max
Glyma.18G137100 0.5kb downstream 0.5kb downstream 500 false Chr18: 20117609-20118108 Glycine max
Glyma.18G137100 1.0kb upstream 1.0kb upstream 5485 true Chr18: 20118109-20123593 Glycine max
Glyma.18G137100 1.0kb upstream 1.0kb upstream 1000 false Chr18: 20122594-20123593 Glycine max
Glyma.18G137100 1.0kb downstream 1.0kb downstream 5485 true Chr18: 20117109-20122593 Glycine max
Glyma.18G137100 1.0kb downstream 1.0kb downstream 1000 false Chr18: 20117109-20118108 Glycine max
Glyma.18G137100 2.0kb upstream 2.0kb upstream 6485 true Chr18: 20118109-20124593 Glycine max
Glyma.18G137100 2.0kb upstream 2.0kb upstream 2000 false Chr18: 20122594-20124593 Glycine max
Glyma.18G137100 2.0kb downstream 2.0kb downstream 6485 true Chr18: 20116109-20122593 Glycine max
Glyma.18G137100 2.0kb downstream 2.0kb downstream 2000 false Chr18: 20116109-20118108 Glycine max
Glyma.18G137100 5.0kb upstream 5.0kb upstream 9485 true Chr18: 20118109-20127593 Glycine max
Glyma.18G137100 5.0kb upstream 5.0kb upstream 5000 false Chr18: 20122594-20127593 Glycine max
Glyma.18G137100 5.0kb downstream 5.0kb downstream 9485 true Chr18: 20113109-20122593 Glycine max
Glyma.18G137100 5.0kb downstream 5.0kb downstream 5000 false Chr18: 20113109-20118108 Glycine max
Glyma.18G137100 10.0kb upstream 10.0kb upstream 14485 true Chr18: 20118109-20132593 Glycine max
Glyma.18G137100 10.0kb upstream 10.0kb upstream 10000 false Chr18: 20122594-20132593 Glycine max
Glyma.18G137100 10.0kb downstream 10.0kb downstream 14485 true Chr18: 20108109-20122593 Glycine max
Glyma.18G137100 10.0kb downstream 10.0kb downstream 10000 false Chr18: 20108109-20118108 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309864 5265 Fabidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.6406 0.0 52.4081    
cufflinks 22.9441 0.0 61.2432 High  
cufflinks 80.9463 0.0 239.529 High High
cufflinks 45.6428 0.0 125.968 High  
cufflinks 26.2182 0.0 70.1231 High  
cufflinks 6.65624 0.0 18.963   Low
cufflinks 18.6249 0.0 49.7279    
cufflinks 21.4999 0.0 57.3659 High  
cufflinks 49.2741 0.0 136.935 High  
cufflinks 13.255     High  
cufflinks 10.137     High  
cufflinks 29.627     High High
cufflinks 6.627        
cufflinks 9.753     High  
cufflinks 14.996     High  
cufflinks 7.296     High  
cufflinks 7.016     High  
cufflinks 40.301     High High
cufflinks 5.759        
cufflinks 16.31     High  
cufflinks 5.553        
cufflinks 9.875     High  
cufflinks 4.518       Low
cufflinks 7.027     High  
cufflinks 11.937     High  
cufflinks 3.81       Low

0 Strain