Gene : Glyma.18G200500 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31503:SF1 - VACUOLAR CATION/PROTON EXCHANGER 1-RELATED Genomic Order:  2005
Name:  ? Glyma.18G200500 Secondary Identifier:  ? PAC:30557070
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G200500 0.5kb upstream 0.5kb upstream 4939 true Chr18: 48016361-48021299 Glycine max
Glyma.18G200500 0.5kb upstream 0.5kb upstream 500 false Chr18: 48020800-48021299 Glycine max
Glyma.18G200500 0.5kb downstream 0.5kb downstream 4939 true Chr18: 48015861-48020799 Glycine max
Glyma.18G200500 0.5kb downstream 0.5kb downstream 500 false Chr18: 48015861-48016360 Glycine max
Glyma.18G200500 1.0kb upstream 1.0kb upstream 5439 true Chr18: 48016361-48021799 Glycine max
Glyma.18G200500 1.0kb upstream 1.0kb upstream 1000 false Chr18: 48020800-48021799 Glycine max
Glyma.18G200500 1.0kb downstream 1.0kb downstream 5439 true Chr18: 48015361-48020799 Glycine max
Glyma.18G200500 1.0kb downstream 1.0kb downstream 1000 false Chr18: 48015361-48016360 Glycine max
Glyma.18G200500 2.0kb upstream 2.0kb upstream 6439 true Chr18: 48016361-48022799 Glycine max
Glyma.18G200500 2.0kb upstream 2.0kb upstream 2000 false Chr18: 48020800-48022799 Glycine max
Glyma.18G200500 2.0kb downstream 2.0kb downstream 6439 true Chr18: 48014361-48020799 Glycine max
Glyma.18G200500 2.0kb downstream 2.0kb downstream 2000 false Chr18: 48014361-48016360 Glycine max
Glyma.18G200500 5.0kb upstream 5.0kb upstream 9439 true Chr18: 48016361-48025799 Glycine max
Glyma.18G200500 5.0kb upstream 5.0kb upstream 5000 false Chr18: 48020800-48025799 Glycine max
Glyma.18G200500 5.0kb downstream 5.0kb downstream 9439 true Chr18: 48011361-48020799 Glycine max
Glyma.18G200500 5.0kb downstream 5.0kb downstream 5000 false Chr18: 48011361-48016360 Glycine max
Glyma.18G200500 10.0kb upstream 10.0kb upstream 14439 true Chr18: 48016361-48030799 Glycine max
Glyma.18G200500 10.0kb upstream 10.0kb upstream 10000 false Chr18: 48020800-48030799 Glycine max
Glyma.18G200500 10.0kb downstream 10.0kb downstream 14439 true Chr18: 48006361-48020799 Glycine max
Glyma.18G200500 10.0kb downstream 10.0kb downstream 10000 false Chr18: 48006361-48016360 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299639 5265 Fabidae View MSA
124065189 5270 Rosid View MSA
123739014 5271 Pentapetalae View MSA
122792056 5272 Eudicot View MSA
122048075 5273 Angiosperm View MSA
121310844 5274 Embryophyte View MSA
123427763 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 191.072 0.0 1556.08 High  
cufflinks 183.278 0.0 1477.68 High  
cufflinks 541.914 0.0 10910.5 High High
cufflinks 57.8737 0.0 297.233 High  
cufflinks 7.51806 0.0 30.001    
cufflinks 1.23689 0.0 4.93269   Low
cufflinks 3.14443 0.0 12.5619    
cufflinks 49.2752 0.0 220.511 High  
cufflinks 0.398284 0.0 1.9139   Low
cufflinks 19.091     High  
cufflinks 0.002     Low Low
cufflinks 61.819     High High
cufflinks 0.094     Low  
cufflinks 0.008     Low Low
cufflinks 0.006     Low Low
cufflinks 3.348        
cufflinks 0.011     Low  
cufflinks 56.985     High High
cufflinks 41.063     High High
cufflinks 4.438        
cufflinks 0.006     Low Low
cufflinks 5.937        
cufflinks 27.585     High High
cufflinks 0.009     Low Low
cufflinks 6.361        
cufflinks 0.021     Low  

0 Strain