Gene : Glyma.18G170200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10383:SF25 - SERINC-DOMAIN CONTAINING SERINE AND SPHINGOLIPID BIOSYNTHESIS PROTEIN Genomic Order:  1702
Name:  ? Glyma.18G170200 Secondary Identifier:  ? PAC:30556648
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G170200 0.5kb upstream 0.5kb upstream 9565 true Chr18: 39912665-39922229 Glycine max
Glyma.18G170200 0.5kb upstream 0.5kb upstream 500 false Chr18: 39912665-39913164 Glycine max
Glyma.18G170200 0.5kb downstream 0.5kb downstream 9565 true Chr18: 39913165-39922729 Glycine max
Glyma.18G170200 0.5kb downstream 0.5kb downstream 500 false Chr18: 39922230-39922729 Glycine max
Glyma.18G170200 1.0kb upstream 1.0kb upstream 10065 true Chr18: 39912165-39922229 Glycine max
Glyma.18G170200 1.0kb upstream 1.0kb upstream 1000 false Chr18: 39912165-39913164 Glycine max
Glyma.18G170200 1.0kb downstream 1.0kb downstream 10065 true Chr18: 39913165-39923229 Glycine max
Glyma.18G170200 1.0kb downstream 1.0kb downstream 1000 false Chr18: 39922230-39923229 Glycine max
Glyma.18G170200 2.0kb upstream 2.0kb upstream 11065 true Chr18: 39911165-39922229 Glycine max
Glyma.18G170200 2.0kb upstream 2.0kb upstream 2000 false Chr18: 39911165-39913164 Glycine max
Glyma.18G170200 2.0kb downstream 2.0kb downstream 11065 true Chr18: 39913165-39924229 Glycine max
Glyma.18G170200 2.0kb downstream 2.0kb downstream 2000 false Chr18: 39922230-39924229 Glycine max
Glyma.18G170200 5.0kb upstream 5.0kb upstream 14065 true Chr18: 39908165-39922229 Glycine max
Glyma.18G170200 5.0kb upstream 5.0kb upstream 5000 false Chr18: 39908165-39913164 Glycine max
Glyma.18G170200 5.0kb downstream 5.0kb downstream 14065 true Chr18: 39913165-39927229 Glycine max
Glyma.18G170200 5.0kb downstream 5.0kb downstream 5000 false Chr18: 39922230-39927229 Glycine max
Glyma.18G170200 10.0kb upstream 10.0kb upstream 19065 true Chr18: 39903165-39922229 Glycine max
Glyma.18G170200 10.0kb upstream 10.0kb upstream 10000 false Chr18: 39903165-39913164 Glycine max
Glyma.18G170200 10.0kb downstream 10.0kb downstream 19065 true Chr18: 39913165-39932229 Glycine max
Glyma.18G170200 10.0kb downstream 10.0kb downstream 10000 false Chr18: 39922230-39932229 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307980 5265 Fabidae View MSA
124068693 5270 Rosid View MSA
123739439 5271 Pentapetalae View MSA
122791258 5272 Eudicot View MSA
122047921 5273 Angiosperm View MSA
121351702 5274 Embryophyte View MSA
123428628 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 58.0395 0.0 164.346 High  
cufflinks 38.2866 0.0 104.349 High Low
cufflinks 93.035 0.0 281.927 High High
cufflinks 61.7447 0.0 176.216 High  
cufflinks 53.1964 0.0 149.318 High  
cufflinks 86.9223 0.0 260.358 High High
cufflinks 62.5289 0.0 178.984 High  
cufflinks 61.1686 0.0 174.613 High  
cufflinks 48.1996 0.0 134.045 High  
cufflinks 6.299        
cufflinks 6.448     High  
cufflinks 8.094     High High
cufflinks 4.594        
cufflinks 3.41       Low
cufflinks 5.429     High  
cufflinks 4.619        
cufflinks 6.761     High  
cufflinks 6.666        
cufflinks 6.114        
cufflinks 5.354        
cufflinks 6.636     High  
cufflinks 5.32        
cufflinks 4.117       Low
cufflinks 7.66     High High
cufflinks 4.517        
cufflinks 7.629     High High

0 Strain