Gene : Glyma.18G171100 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR22847//PTHR22847:SF473 - WD40 REPEAT PROTEIN Genomic Order:  1711
Name:  ? Glyma.18G171100 Secondary Identifier:  ? PAC:30558640
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G171100 0.5kb upstream 0.5kb upstream 10214 true Chr18: 40273606-40283819 Glycine max
Glyma.18G171100 0.5kb upstream 0.5kb upstream 500 false Chr18: 40273606-40274105 Glycine max
Glyma.18G171100 0.5kb downstream 0.5kb downstream 10214 true Chr18: 40274106-40284319 Glycine max
Glyma.18G171100 0.5kb downstream 0.5kb downstream 500 false Chr18: 40283820-40284319 Glycine max
Glyma.18G171100 1.0kb upstream 1.0kb upstream 10714 true Chr18: 40273106-40283819 Glycine max
Glyma.18G171100 1.0kb upstream 1.0kb upstream 1000 false Chr18: 40273106-40274105 Glycine max
Glyma.18G171100 1.0kb downstream 1.0kb downstream 10714 true Chr18: 40274106-40284819 Glycine max
Glyma.18G171100 1.0kb downstream 1.0kb downstream 1000 false Chr18: 40283820-40284819 Glycine max
Glyma.18G171100 2.0kb upstream 2.0kb upstream 11714 true Chr18: 40272106-40283819 Glycine max
Glyma.18G171100 2.0kb upstream 2.0kb upstream 2000 false Chr18: 40272106-40274105 Glycine max
Glyma.18G171100 2.0kb downstream 2.0kb downstream 11714 true Chr18: 40274106-40285819 Glycine max
Glyma.18G171100 2.0kb downstream 2.0kb downstream 2000 false Chr18: 40283820-40285819 Glycine max
Glyma.18G171100 5.0kb upstream 5.0kb upstream 14714 true Chr18: 40269106-40283819 Glycine max
Glyma.18G171100 5.0kb upstream 5.0kb upstream 5000 false Chr18: 40269106-40274105 Glycine max
Glyma.18G171100 5.0kb downstream 5.0kb downstream 14714 true Chr18: 40274106-40288819 Glycine max
Glyma.18G171100 5.0kb downstream 5.0kb downstream 5000 false Chr18: 40283820-40288819 Glycine max
Glyma.18G171100 10.0kb upstream 10.0kb upstream 19714 true Chr18: 40264106-40283819 Glycine max
Glyma.18G171100 10.0kb upstream 10.0kb upstream 10000 false Chr18: 40264106-40274105 Glycine max
Glyma.18G171100 10.0kb downstream 10.0kb downstream 19714 true Chr18: 40274106-40293819 Glycine max
Glyma.18G171100 10.0kb downstream 10.0kb downstream 10000 false Chr18: 40283820-40293819 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306569 5265 Fabidae View MSA
124070895 5270 Rosid View MSA
123751820 5271 Pentapetalae View MSA
122789823 5272 Eudicot View MSA
122046787 5273 Angiosperm View MSA
123429146 5275 Viridiplantae View MSA
121350041 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.0 0.0 53.3552    
cufflinks 12.3981 0.0 43.4351    
cufflinks 20.1863 0.0 75.6392 High High
cufflinks 13.7339 0.0 48.1735    
cufflinks 7.29995 0.0 25.372   Low
cufflinks 6.613 0.0 23.1763   Low
cufflinks 16.8334 0.0 60.3326    
cufflinks 16.9228 0.0 61.0179    
cufflinks 10.2421 0.0 35.4109    
cufflinks 2.195        
cufflinks 2.892        
cufflinks 3.244        
cufflinks 1.208       Low
cufflinks 1.019       Low
cufflinks 1.599        
cufflinks 2.077        
cufflinks 1.847        
cufflinks 4.073       High
cufflinks 2.528        
cufflinks 2.964        
cufflinks 2.415        
cufflinks 2.885        
cufflinks 2.118        
cufflinks 3.411       High
cufflinks 2.45        
cufflinks 1.756        

0 Strain