Gene : Glyma.18G220500 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR10366:SF425 - BRASSINOSTEROID METABOLIC PATHWAY PROTEIN BEN1 Genomic Order:  2205
Name:  ? Glyma.18G220500 Secondary Identifier:  ? PAC:30554782
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-2229 Glycine max pathologic  
Gmax PWY-2463 Glycine max pathologic  
Gmax PWY-2464 Glycine max pathologic  
Gmax PWY-2761 Glycine max pathologic  
Gmax PWY-5717 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G220500 0.5kb upstream 0.5kb upstream 3256 true Chr18: 50735188-50738443 Glycine max
Glyma.18G220500 0.5kb upstream 0.5kb upstream 500 false Chr18: 50737944-50738443 Glycine max
Glyma.18G220500 0.5kb downstream 0.5kb downstream 3256 true Chr18: 50734688-50737943 Glycine max
Glyma.18G220500 0.5kb downstream 0.5kb downstream 500 false Chr18: 50734688-50735187 Glycine max
Glyma.18G220500 1.0kb upstream 1.0kb upstream 3756 true Chr18: 50735188-50738943 Glycine max
Glyma.18G220500 1.0kb upstream 1.0kb upstream 1000 false Chr18: 50737944-50738943 Glycine max
Glyma.18G220500 1.0kb downstream 1.0kb downstream 3756 true Chr18: 50734188-50737943 Glycine max
Glyma.18G220500 1.0kb downstream 1.0kb downstream 1000 false Chr18: 50734188-50735187 Glycine max
Glyma.18G220500 2.0kb upstream 2.0kb upstream 4756 true Chr18: 50735188-50739943 Glycine max
Glyma.18G220500 2.0kb upstream 2.0kb upstream 2000 false Chr18: 50737944-50739943 Glycine max
Glyma.18G220500 2.0kb downstream 2.0kb downstream 4756 true Chr18: 50733188-50737943 Glycine max
Glyma.18G220500 2.0kb downstream 2.0kb downstream 2000 false Chr18: 50733188-50735187 Glycine max
Glyma.18G220500 5.0kb upstream 5.0kb upstream 7756 true Chr18: 50735188-50742943 Glycine max
Glyma.18G220500 5.0kb upstream 5.0kb upstream 5000 false Chr18: 50737944-50742943 Glycine max
Glyma.18G220500 5.0kb downstream 5.0kb downstream 7756 true Chr18: 50730188-50737943 Glycine max
Glyma.18G220500 5.0kb downstream 5.0kb downstream 5000 false Chr18: 50730188-50735187 Glycine max
Glyma.18G220500 10.0kb upstream 10.0kb upstream 12756 true Chr18: 50735188-50747943 Glycine max
Glyma.18G220500 10.0kb upstream 10.0kb upstream 10000 false Chr18: 50737944-50747943 Glycine max
Glyma.18G220500 10.0kb downstream 10.0kb downstream 12756 true Chr18: 50725188-50737943 Glycine max
Glyma.18G220500 10.0kb downstream 10.0kb downstream 10000 false Chr18: 50725188-50735187 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031301 5273 Angiosperm View MSA
122314530 5265 Fabidae View MSA
124066855 5270 Rosid View MSA
123745083 5271 Pentapetalae View MSA
122790638 5272 Eudicot View MSA
121300366 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.0749 0.0 64.2413 High  
cufflinks 8.89894 0.0 24.7913    
cufflinks 3.06234 0.0 9.74317    
cufflinks 2.44474 0.0 8.04285    
cufflinks 15.8602 0.0 42.5815    
cufflinks 105.342 0.0 319.725 High High
cufflinks 0.895408 0.0 3.24039   Low
cufflinks 4.35258 0.0 13.2013    
cufflinks 31.5672 0.0 84.7523 High  
cufflinks 0.778       Low
cufflinks 3.927        
cufflinks 4.443        
cufflinks 34.304     High High
cufflinks 4.694        
cufflinks 1.999        
cufflinks 1.004        
cufflinks 22.114     High High
cufflinks 2.077        
cufflinks 4.612        
cufflinks 0.39       Low
cufflinks 6.046     High  
cufflinks 1.562        
cufflinks 3.996        
cufflinks 11.673     High  
cufflinks 0.631       Low
cufflinks 18.092     High High

0 Strain