Gene : Glyma.18G221800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR33601:SF1 - LITTLE ZIPPER 1 PROTEIN-RELATED Genomic Order:  2218
Name:  ? Glyma.18G221800 Secondary Identifier:  ? PAC:30557102
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G221800 0.5kb upstream 0.5kb upstream 1983 true Chr18: 50886945-50888927 Glycine max
Glyma.18G221800 0.5kb upstream 0.5kb upstream 500 false Chr18: 50888428-50888927 Glycine max
Glyma.18G221800 0.5kb downstream 0.5kb downstream 1983 true Chr18: 50886445-50888427 Glycine max
Glyma.18G221800 0.5kb downstream 0.5kb downstream 500 false Chr18: 50886445-50886944 Glycine max
Glyma.18G221800 1.0kb upstream 1.0kb upstream 2483 true Chr18: 50886945-50889427 Glycine max
Glyma.18G221800 1.0kb upstream 1.0kb upstream 1000 false Chr18: 50888428-50889427 Glycine max
Glyma.18G221800 1.0kb downstream 1.0kb downstream 2483 true Chr18: 50885945-50888427 Glycine max
Glyma.18G221800 1.0kb downstream 1.0kb downstream 1000 false Chr18: 50885945-50886944 Glycine max
Glyma.18G221800 2.0kb upstream 2.0kb upstream 3483 true Chr18: 50886945-50890427 Glycine max
Glyma.18G221800 2.0kb upstream 2.0kb upstream 2000 false Chr18: 50888428-50890427 Glycine max
Glyma.18G221800 2.0kb downstream 2.0kb downstream 3483 true Chr18: 50884945-50888427 Glycine max
Glyma.18G221800 2.0kb downstream 2.0kb downstream 2000 false Chr18: 50884945-50886944 Glycine max
Glyma.18G221800 5.0kb upstream 5.0kb upstream 6483 true Chr18: 50886945-50893427 Glycine max
Glyma.18G221800 5.0kb upstream 5.0kb upstream 5000 false Chr18: 50888428-50893427 Glycine max
Glyma.18G221800 5.0kb downstream 5.0kb downstream 6483 true Chr18: 50881945-50888427 Glycine max
Glyma.18G221800 5.0kb downstream 5.0kb downstream 5000 false Chr18: 50881945-50886944 Glycine max
Glyma.18G221800 10.0kb upstream 10.0kb upstream 11483 true Chr18: 50886945-50898427 Glycine max
Glyma.18G221800 10.0kb upstream 10.0kb upstream 10000 false Chr18: 50888428-50898427 Glycine max
Glyma.18G221800 10.0kb downstream 10.0kb downstream 11483 true Chr18: 50876945-50888427 Glycine max
Glyma.18G221800 10.0kb downstream 10.0kb downstream 10000 false Chr18: 50876945-50886944 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041483 5273 Angiosperm View MSA
122301042 5265 Fabidae View MSA
124070399 5270 Rosid View MSA
123743735 5271 Pentapetalae View MSA
122787347 5272 Eudicot View MSA
121309855 5274 Embryophyte View MSA
123347500 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.44168 0.0 11.278    
cufflinks 16.8042 0.0 45.5207   High
cufflinks 2.40799 0.0 8.17908    
cufflinks 4.51412 0.0 14.1605    
cufflinks 3.52834 0.0 11.5298    
cufflinks 2.61864 0.0 8.86982    
cufflinks 1.65173 0.0 5.8507   Low
cufflinks 4.34362 0.0 13.6849    
cufflinks 2.21063 0.0 7.60921    
cufflinks 9.307     High  
cufflinks 12.134     High  
cufflinks 3.942        
cufflinks 0.344       Low
cufflinks 0.172       Low
cufflinks 8.216     High  
cufflinks 16.918     High  
cufflinks 2.485        
cufflinks 5.191        
cufflinks 10.645     High  
cufflinks 31.737     High High
cufflinks 7.386     High  
cufflinks 24.12     High  
cufflinks 12.047     High  
cufflinks 11.415     High  
cufflinks 27.397     High High
cufflinks 4.825        

0 Strain