Gene : Glyma.18G212300 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR10126 - TATA-BOX BINDING PROTEIN Genomic Order:  2123
Name:  ? Glyma.18G212300 Secondary Identifier:  ? PAC:30555763
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G212300 0.5kb upstream 0.5kb upstream 5599 true Chr18: 49880181-49885779 Glycine max
Glyma.18G212300 0.5kb upstream 0.5kb upstream 500 false Chr18: 49880181-49880680 Glycine max
Glyma.18G212300 0.5kb downstream 0.5kb downstream 5599 true Chr18: 49880681-49886279 Glycine max
Glyma.18G212300 0.5kb downstream 0.5kb downstream 500 false Chr18: 49885780-49886279 Glycine max
Glyma.18G212300 1.0kb upstream 1.0kb upstream 6099 true Chr18: 49879681-49885779 Glycine max
Glyma.18G212300 1.0kb upstream 1.0kb upstream 1000 false Chr18: 49879681-49880680 Glycine max
Glyma.18G212300 1.0kb downstream 1.0kb downstream 6099 true Chr18: 49880681-49886779 Glycine max
Glyma.18G212300 1.0kb downstream 1.0kb downstream 1000 false Chr18: 49885780-49886779 Glycine max
Glyma.18G212300 2.0kb upstream 2.0kb upstream 7099 true Chr18: 49878681-49885779 Glycine max
Glyma.18G212300 2.0kb upstream 2.0kb upstream 2000 false Chr18: 49878681-49880680 Glycine max
Glyma.18G212300 2.0kb downstream 2.0kb downstream 7099 true Chr18: 49880681-49887779 Glycine max
Glyma.18G212300 2.0kb downstream 2.0kb downstream 2000 false Chr18: 49885780-49887779 Glycine max
Glyma.18G212300 5.0kb upstream 5.0kb upstream 10099 true Chr18: 49875681-49885779 Glycine max
Glyma.18G212300 5.0kb upstream 5.0kb upstream 5000 false Chr18: 49875681-49880680 Glycine max
Glyma.18G212300 5.0kb downstream 5.0kb downstream 10099 true Chr18: 49880681-49890779 Glycine max
Glyma.18G212300 5.0kb downstream 5.0kb downstream 5000 false Chr18: 49885780-49890779 Glycine max
Glyma.18G212300 10.0kb upstream 10.0kb upstream 15099 true Chr18: 49870681-49885779 Glycine max
Glyma.18G212300 10.0kb upstream 10.0kb upstream 10000 false Chr18: 49870681-49880680 Glycine max
Glyma.18G212300 10.0kb downstream 10.0kb downstream 15099 true Chr18: 49880681-49895779 Glycine max
Glyma.18G212300 10.0kb downstream 10.0kb downstream 10000 false Chr18: 49885780-49895779 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316484 5265 Fabidae View MSA
124067896 5270 Rosid View MSA
123751574 5271 Pentapetalae View MSA
122793638 5272 Eudicot View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.33218 0.0 4.68594   Low
cufflinks 9.59179 0.0 26.4546   High
cufflinks 5.43968 0.0 15.9189    
cufflinks 7.37453 0.0 20.8397    
cufflinks 5.22993 0.0 15.5061    
cufflinks 5.21578 0.0 15.4261    
cufflinks 9.44628 0.0 26.2071    
cufflinks 4.58838 0.0 13.7752    
cufflinks 5.29941 0.0 15.6162    
cufflinks 2.265        
cufflinks 2.023        
cufflinks 2.517        
cufflinks 1.771        
cufflinks 1.752        
cufflinks 0.64       Low
cufflinks 1.049        
cufflinks 1.652        
cufflinks 3.565       High
cufflinks 3.381       High
cufflinks 0.849       Low
cufflinks 1.009        
cufflinks 0.927        
cufflinks 1.637        
cufflinks 2.17        
cufflinks 0.702       Low
cufflinks 1.261        

0 Strain