Gene : Glyma.18G202500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR35499:SF2 - ALC-INTERACTING PROTEIN 1 Genomic Order:  2025
Name:  ? Glyma.18G202500 Secondary Identifier:  ? PAC:30554463
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G202500 0.5kb upstream 0.5kb upstream 2686 true Chr18: 48352968-48355653 Glycine max
Glyma.18G202500 0.5kb upstream 0.5kb upstream 500 false Chr18: 48355154-48355653 Glycine max
Glyma.18G202500 0.5kb downstream 0.5kb downstream 2686 true Chr18: 48352468-48355153 Glycine max
Glyma.18G202500 0.5kb downstream 0.5kb downstream 500 false Chr18: 48352468-48352967 Glycine max
Glyma.18G202500 1.0kb upstream 1.0kb upstream 3186 true Chr18: 48352968-48356153 Glycine max
Glyma.18G202500 1.0kb upstream 1.0kb upstream 1000 false Chr18: 48355154-48356153 Glycine max
Glyma.18G202500 1.0kb downstream 1.0kb downstream 3186 true Chr18: 48351968-48355153 Glycine max
Glyma.18G202500 1.0kb downstream 1.0kb downstream 1000 false Chr18: 48351968-48352967 Glycine max
Glyma.18G202500 2.0kb upstream 2.0kb upstream 4186 true Chr18: 48352968-48357153 Glycine max
Glyma.18G202500 2.0kb upstream 2.0kb upstream 2000 false Chr18: 48355154-48357153 Glycine max
Glyma.18G202500 2.0kb downstream 2.0kb downstream 4186 true Chr18: 48350968-48355153 Glycine max
Glyma.18G202500 2.0kb downstream 2.0kb downstream 2000 false Chr18: 48350968-48352967 Glycine max
Glyma.18G202500 5.0kb upstream 5.0kb upstream 7186 true Chr18: 48352968-48360153 Glycine max
Glyma.18G202500 5.0kb upstream 5.0kb upstream 5000 false Chr18: 48355154-48360153 Glycine max
Glyma.18G202500 5.0kb downstream 5.0kb downstream 7186 true Chr18: 48347968-48355153 Glycine max
Glyma.18G202500 5.0kb downstream 5.0kb downstream 5000 false Chr18: 48347968-48352967 Glycine max
Glyma.18G202500 10.0kb upstream 10.0kb upstream 12186 true Chr18: 48352968-48365153 Glycine max
Glyma.18G202500 10.0kb upstream 10.0kb upstream 10000 false Chr18: 48355154-48365153 Glycine max
Glyma.18G202500 10.0kb downstream 10.0kb downstream 12186 true Chr18: 48342968-48355153 Glycine max
Glyma.18G202500 10.0kb downstream 10.0kb downstream 10000 false Chr18: 48342968-48352967 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309323 5265 Fabidae View MSA
124062218 5270 Rosid View MSA
123751087 5271 Pentapetalae View MSA
122789400 5272 Eudicot View MSA
122050315 5273 Angiosperm View MSA
121311850 5274 Embryophyte View MSA
123349090 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.240866 0.0 0.92642   High
cufflinks 0.0270806 0.0 0.11567 Low  
cufflinks 0.0347744 0.0 0.145569 Low  
cufflinks 0.00743515 0.0 0.0357484 Low Low
cufflinks 0.0363179 0.0 0.151985 Low  
cufflinks 0.159208 0.0 0.62313 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.173087 0.0 0.673708 Low  
cufflinks 0.0696243 0.0 0.280786 Low  
cufflinks 0.118        
cufflinks 0.105        
cufflinks 0.154        
cufflinks 0.642       High
cufflinks 0.044     Low  
cufflinks 0.275        
cufflinks 0.026     Low Low
cufflinks 0.023     Low Low
cufflinks 0.162        
cufflinks 0.203        
cufflinks 0.066     Low  
cufflinks 0.236        
cufflinks 0.071     Low  
cufflinks 0.367       High
cufflinks 0.429       High
cufflinks 0.01     Low Low
cufflinks 0.08        

0 Strain