Gene : Glyma.01G236600 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11830 - 40S RIBOSOMAL PROTEIN S3A Genomic Order:  2366
Name:  ? Glyma.01G236600 Secondary Identifier:  ? PAC:30542839
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G236600 0.5kb upstream 0.5kb upstream 3064 true Chr01: 56195047-56198110 Glycine max
Glyma.01G236600 0.5kb upstream 0.5kb upstream 500 false Chr01: 56197611-56198110 Glycine max
Glyma.01G236600 0.5kb downstream 0.5kb downstream 3064 true Chr01: 56194547-56197610 Glycine max
Glyma.01G236600 0.5kb downstream 0.5kb downstream 500 false Chr01: 56194547-56195046 Glycine max
Glyma.01G236600 1.0kb upstream 1.0kb upstream 3564 true Chr01: 56195047-56198610 Glycine max
Glyma.01G236600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 56197611-56198610 Glycine max
Glyma.01G236600 1.0kb downstream 1.0kb downstream 3564 true Chr01: 56194047-56197610 Glycine max
Glyma.01G236600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 56194047-56195046 Glycine max
Glyma.01G236600 2.0kb upstream 2.0kb upstream 4564 true Chr01: 56195047-56199610 Glycine max
Glyma.01G236600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 56197611-56199610 Glycine max
Glyma.01G236600 2.0kb downstream 2.0kb downstream 4564 true Chr01: 56193047-56197610 Glycine max
Glyma.01G236600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 56193047-56195046 Glycine max
Glyma.01G236600 5.0kb upstream 5.0kb upstream 7564 true Chr01: 56195047-56202610 Glycine max
Glyma.01G236600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 56197611-56202610 Glycine max
Glyma.01G236600 5.0kb downstream 5.0kb downstream 7564 true Chr01: 56190047-56197610 Glycine max
Glyma.01G236600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 56190047-56195046 Glycine max
Glyma.01G236600 10.0kb upstream 10.0kb upstream 12564 true Chr01: 56195047-56207610 Glycine max
Glyma.01G236600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 56197611-56207610 Glycine max
Glyma.01G236600 10.0kb downstream 10.0kb downstream 12564 true Chr01: 56185047-56197610 Glycine max
Glyma.01G236600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 56185047-56195046 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307732 5265 Fabidae View MSA
124066895 5270 Rosid View MSA
123743383 5271 Pentapetalae View MSA
122787922 5272 Eudicot View MSA
122049456 5273 Angiosperm View MSA
121347467 5274 Embryophyte View MSA
123424177 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.4391 0.0 188.147 High  
cufflinks 61.7514 0.0 240.661 High  
cufflinks 22.4329 0.0 77.9012 High Low
cufflinks 40.3203 0.0 145.942 High  
cufflinks 121.768 0.0 515.162 High High
cufflinks 110.644 0.0 450.858 High High
cufflinks 82.957 0.0 352.232 High  
cufflinks 62.6569 0.0 249.481 High  
cufflinks 77.2606 0.0 323.125 High  
cufflinks 19.507     High  
cufflinks 5.526     High Low
cufflinks 15.895     High  
cufflinks 73.212     High High
cufflinks 112.639     High High
cufflinks 5.666     High Low
cufflinks 12.01     High  
cufflinks 15.313     High  
cufflinks 16.668     High  
cufflinks 24.405     High  
cufflinks 8.427     High  
cufflinks 10.209     High  
cufflinks 9.988     High  
cufflinks 19.838     High  
cufflinks 7.247     High  
cufflinks 11.19     High  
cufflinks 14.388     High  

0 Strain