Gene : Glyma.18G243700 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR31088:SF6 - MEMBRANE-ASSOCIATED PROTEIN VIPP1, CHLOROPLASTIC Genomic Order:  2437
Name:  ? Glyma.18G243700 Secondary Identifier:  ? PAC:30555088
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G243700 0.5kb upstream 0.5kb upstream 5696 true Chr18: 53168847-53174542 Glycine max
Glyma.18G243700 0.5kb upstream 0.5kb upstream 500 false Chr18: 53168847-53169346 Glycine max
Glyma.18G243700 0.5kb downstream 0.5kb downstream 5696 true Chr18: 53169347-53175042 Glycine max
Glyma.18G243700 0.5kb downstream 0.5kb downstream 500 false Chr18: 53174543-53175042 Glycine max
Glyma.18G243700 1.0kb upstream 1.0kb upstream 6196 true Chr18: 53168347-53174542 Glycine max
Glyma.18G243700 1.0kb upstream 1.0kb upstream 1000 false Chr18: 53168347-53169346 Glycine max
Glyma.18G243700 1.0kb downstream 1.0kb downstream 6196 true Chr18: 53169347-53175542 Glycine max
Glyma.18G243700 1.0kb downstream 1.0kb downstream 1000 false Chr18: 53174543-53175542 Glycine max
Glyma.18G243700 2.0kb upstream 2.0kb upstream 7196 true Chr18: 53167347-53174542 Glycine max
Glyma.18G243700 2.0kb upstream 2.0kb upstream 2000 false Chr18: 53167347-53169346 Glycine max
Glyma.18G243700 2.0kb downstream 2.0kb downstream 7196 true Chr18: 53169347-53176542 Glycine max
Glyma.18G243700 2.0kb downstream 2.0kb downstream 2000 false Chr18: 53174543-53176542 Glycine max
Glyma.18G243700 5.0kb upstream 5.0kb upstream 10196 true Chr18: 53164347-53174542 Glycine max
Glyma.18G243700 5.0kb upstream 5.0kb upstream 5000 false Chr18: 53164347-53169346 Glycine max
Glyma.18G243700 5.0kb downstream 5.0kb downstream 10196 true Chr18: 53169347-53179542 Glycine max
Glyma.18G243700 5.0kb downstream 5.0kb downstream 5000 false Chr18: 53174543-53179542 Glycine max
Glyma.18G243700 10.0kb upstream 10.0kb upstream 15196 true Chr18: 53159347-53174542 Glycine max
Glyma.18G243700 10.0kb upstream 10.0kb upstream 10000 false Chr18: 53159347-53169346 Glycine max
Glyma.18G243700 10.0kb downstream 10.0kb downstream 15196 true Chr18: 53169347-53184542 Glycine max
Glyma.18G243700 10.0kb downstream 10.0kb downstream 10000 false Chr18: 53174543-53184542 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254378 5265 Fabidae View MSA
124067961 5270 Rosid View MSA
123738548 5271 Pentapetalae View MSA
122792154 5272 Eudicot View MSA
122046010 5273 Angiosperm View MSA
121345792 5274 Embryophyte View MSA
123427031 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.91457 0.0 19.4192    
cufflinks 4.66444 0.0 13.6994   Low
cufflinks 4.69183 0.0 13.7197   Low
cufflinks 5.94709 0.0 16.9128    
cufflinks 5.39652 0.0 15.5701    
cufflinks 4.42477 0.0 13.0867   Low
cufflinks 7.3591 0.0 20.5408   High
cufflinks 6.64588 0.0 18.6838    
cufflinks 6.41852 0.0 18.1344    
cufflinks 1.421        
cufflinks 1.498        
cufflinks 1.835        
cufflinks 1.297        
cufflinks 1.702        
cufflinks 1.72        
cufflinks 0.931       Low
cufflinks 1.658        
cufflinks 1.825        
cufflinks 1.337        
cufflinks 1.069       Low
cufflinks 1.847        
cufflinks 1.031       Low
cufflinks 0.965       Low
cufflinks 2.053       High
cufflinks 1.002       Low
cufflinks 2.276       High

0 Strain