Gene : Glyma.01G166600 G. max Wm82.a2.v1
Defline:  (1 of 3) KOG3149 - Transcription initiation factor IIF, auxiliary subunit Genomic Order:  1666
Name:  ? Glyma.01G166600 Secondary Identifier:  ? PAC:30543288
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G166600 0.5kb upstream 0.5kb upstream 3698 true Chr01: 50443699-50447396 Glycine max
Glyma.01G166600 0.5kb upstream 0.5kb upstream 500 false Chr01: 50446897-50447396 Glycine max
Glyma.01G166600 0.5kb downstream 0.5kb downstream 3698 true Chr01: 50443199-50446896 Glycine max
Glyma.01G166600 0.5kb downstream 0.5kb downstream 500 false Chr01: 50443199-50443698 Glycine max
Glyma.01G166600 1.0kb upstream 1.0kb upstream 4198 true Chr01: 50443699-50447896 Glycine max
Glyma.01G166600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50446897-50447896 Glycine max
Glyma.01G166600 1.0kb downstream 1.0kb downstream 4198 true Chr01: 50442699-50446896 Glycine max
Glyma.01G166600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50442699-50443698 Glycine max
Glyma.01G166600 2.0kb upstream 2.0kb upstream 5198 true Chr01: 50443699-50448896 Glycine max
Glyma.01G166600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50446897-50448896 Glycine max
Glyma.01G166600 2.0kb downstream 2.0kb downstream 5198 true Chr01: 50441699-50446896 Glycine max
Glyma.01G166600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50441699-50443698 Glycine max
Glyma.01G166600 5.0kb upstream 5.0kb upstream 8198 true Chr01: 50443699-50451896 Glycine max
Glyma.01G166600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50446897-50451896 Glycine max
Glyma.01G166600 5.0kb downstream 5.0kb downstream 8198 true Chr01: 50438699-50446896 Glycine max
Glyma.01G166600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50438699-50443698 Glycine max
Glyma.01G166600 10.0kb upstream 10.0kb upstream 13198 true Chr01: 50443699-50456896 Glycine max
Glyma.01G166600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50446897-50456896 Glycine max
Glyma.01G166600 10.0kb downstream 10.0kb downstream 13198 true Chr01: 50433699-50446896 Glycine max
Glyma.01G166600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50433699-50443698 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301473 5265 Fabidae View MSA
124070032 5270 Rosid View MSA
123737599 5271 Pentapetalae View MSA
122789649 5272 Eudicot View MSA
122044326 5273 Angiosperm View MSA
121346764 5274 Embryophyte View MSA
123428525 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.06858 0.0 15.2777   High
cufflinks 4.36129 0.0 15.884   High
cufflinks 2.65753 0.0 11.3051   Low
cufflinks 3.6898 0.0 14.1009    
cufflinks 2.9128 0.0 12.0921    
cufflinks 2.47108 0.0 10.7157   Low
cufflinks 2.8059 0.0 11.833    
cufflinks 3.45486 0.0 13.5149    
cufflinks 3.47527 0.0 13.5597    
cufflinks 0.76        
cufflinks 0.556       Low
cufflinks 0.931        
cufflinks 1.075        
cufflinks 1.107        
cufflinks 0.597       Low
cufflinks 1.363        
cufflinks 0.539       Low
cufflinks 1.363        
cufflinks 1.461       High
cufflinks 1.374        
cufflinks 0.592       Low
cufflinks 1.444       High
cufflinks 1.478       High
cufflinks 0.626       Low
cufflinks 1.456       High
cufflinks 0.652        

0 Strain