Gene : Glyma.01G177200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31636:SF53 - SCARECROW-LIKE PROTEIN 15 Genomic Order:  1772
Name:  ? Glyma.01G177200 Secondary Identifier:  ? PAC:30544989
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G177200 0.5kb upstream 0.5kb upstream 2577 true Chr01: 51367000-51369576 Glycine max
Glyma.01G177200 0.5kb upstream 0.5kb upstream 500 false Chr01: 51367000-51367499 Glycine max
Glyma.01G177200 0.5kb downstream 0.5kb downstream 2577 true Chr01: 51367500-51370076 Glycine max
Glyma.01G177200 0.5kb downstream 0.5kb downstream 500 false Chr01: 51369577-51370076 Glycine max
Glyma.01G177200 1.0kb upstream 1.0kb upstream 3077 true Chr01: 51366500-51369576 Glycine max
Glyma.01G177200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 51366500-51367499 Glycine max
Glyma.01G177200 1.0kb downstream 1.0kb downstream 3077 true Chr01: 51367500-51370576 Glycine max
Glyma.01G177200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 51369577-51370576 Glycine max
Glyma.01G177200 2.0kb upstream 2.0kb upstream 4077 true Chr01: 51365500-51369576 Glycine max
Glyma.01G177200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 51365500-51367499 Glycine max
Glyma.01G177200 2.0kb downstream 2.0kb downstream 4077 true Chr01: 51367500-51371576 Glycine max
Glyma.01G177200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 51369577-51371576 Glycine max
Glyma.01G177200 5.0kb upstream 5.0kb upstream 7077 true Chr01: 51362500-51369576 Glycine max
Glyma.01G177200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 51362500-51367499 Glycine max
Glyma.01G177200 5.0kb downstream 5.0kb downstream 7077 true Chr01: 51367500-51374576 Glycine max
Glyma.01G177200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 51369577-51374576 Glycine max
Glyma.01G177200 10.0kb upstream 10.0kb upstream 12077 true Chr01: 51357500-51369576 Glycine max
Glyma.01G177200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 51357500-51367499 Glycine max
Glyma.01G177200 10.0kb downstream 10.0kb downstream 12077 true Chr01: 51367500-51379576 Glycine max
Glyma.01G177200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 51369577-51379576 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310795 5265 Fabidae View MSA
124061987 5270 Rosid View MSA
123738804 5271 Pentapetalae View MSA
122792539 5272 Eudicot View MSA
122048418 5273 Angiosperm View MSA
121350524 5274 Embryophyte View MSA
123381771 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.0497 0.0 32.2083   High
cufflinks 1.95211 0.0 6.30556    
cufflinks 14.1068 0.0 37.6887   High
cufflinks 4.66597 0.0 13.3699    
cufflinks 1.70094 0.0 5.50717    
cufflinks 0.846725 0.0 2.98207   Low
cufflinks 1.36598 0.0 4.57584    
cufflinks 5.6521 0.0 15.8421    
cufflinks 1.70218 0.0 5.56531    
cufflinks 3.677        
cufflinks 2.375        
cufflinks 6.639       High
cufflinks 2.24        
cufflinks 1.036       Low
cufflinks 0.28       Low
cufflinks 2.068        
cufflinks 4.204        
cufflinks 7.218       High
cufflinks 1.938        
cufflinks 2.386        
cufflinks 1.311        
cufflinks 2.644        
cufflinks 2.233        
cufflinks 2.179        
cufflinks 1.951        
cufflinks 1.401        

0 Strain