Gene : Glyma.01G082200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21089:SF1 - BIFUNCTIONAL 3-DEHYDROQUINATE DEHYDRATASE/SHIKIMATE DEHYDROGENASE, CHLOROPLASTIC Genomic Order:  822
Name:  ? Glyma.01G082200 Secondary Identifier:  ? PAC:30542188
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ARO-PWY Glycine max pathologic  
Gmax PWY-6163 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G082200 0.5kb upstream 0.5kb upstream 9127 true Chr01: 23955583-23964709 Glycine max
Glyma.01G082200 0.5kb upstream 0.5kb upstream 500 false Chr01: 23955583-23956082 Glycine max
Glyma.01G082200 0.5kb downstream 0.5kb downstream 9127 true Chr01: 23956083-23965209 Glycine max
Glyma.01G082200 0.5kb downstream 0.5kb downstream 500 false Chr01: 23964710-23965209 Glycine max
Glyma.01G082200 1.0kb upstream 1.0kb upstream 9627 true Chr01: 23955083-23964709 Glycine max
Glyma.01G082200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 23955083-23956082 Glycine max
Glyma.01G082200 1.0kb downstream 1.0kb downstream 9627 true Chr01: 23956083-23965709 Glycine max
Glyma.01G082200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 23964710-23965709 Glycine max
Glyma.01G082200 2.0kb upstream 2.0kb upstream 10627 true Chr01: 23954083-23964709 Glycine max
Glyma.01G082200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 23954083-23956082 Glycine max
Glyma.01G082200 2.0kb downstream 2.0kb downstream 10627 true Chr01: 23956083-23966709 Glycine max
Glyma.01G082200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 23964710-23966709 Glycine max
Glyma.01G082200 5.0kb upstream 5.0kb upstream 13627 true Chr01: 23951083-23964709 Glycine max
Glyma.01G082200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 23951083-23956082 Glycine max
Glyma.01G082200 5.0kb downstream 5.0kb downstream 13627 true Chr01: 23956083-23969709 Glycine max
Glyma.01G082200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 23964710-23969709 Glycine max
Glyma.01G082200 10.0kb upstream 10.0kb upstream 18627 true Chr01: 23946083-23964709 Glycine max
Glyma.01G082200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 23946083-23956082 Glycine max
Glyma.01G082200 10.0kb downstream 10.0kb downstream 18627 true Chr01: 23956083-23974709 Glycine max
Glyma.01G082200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 23964710-23974709 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309838 5265 Fabidae View MSA
124068153 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.2807 0.0 160.449 High High
cufflinks 30.2756 0.0 91.9028 High  
cufflinks 28.0397 0.0 87.7563 High Low
cufflinks 40.6435 0.0 128.699 High  
cufflinks 38.4486 0.0 126.683 High  
cufflinks 47.8311 0.0 165.925 High High
cufflinks 24.4728 0.0 83.8268 High Low
cufflinks 40.0781 0.0 127.563 High  
cufflinks 37.9748 0.0 125.137 High  
cufflinks 5.57       High
cufflinks 3.037       Low
cufflinks 3.983        
cufflinks 6.008       High
cufflinks 4.996        
cufflinks 2.986       Low
cufflinks 4.172        
cufflinks 4.198        
cufflinks 4.456        
cufflinks 4.867        
cufflinks 5.374       High
cufflinks 3.621        
cufflinks 4.789        
cufflinks 4.251        
cufflinks 3.536       Low
cufflinks 4.593        
cufflinks 4.217        

0 Strain