Gene : Glyma.01G087500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31140:SF3 - AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR RAV2-RELATED Genomic Order:  875
Name:  ? Glyma.01G087500 Secondary Identifier:  ? PAC:30544471
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G087500 0.5kb upstream 0.5kb upstream 2324 true Chr01: 26423047-26425370 Glycine max
Glyma.01G087500 0.5kb upstream 0.5kb upstream 500 false Chr01: 26424871-26425370 Glycine max
Glyma.01G087500 0.5kb downstream 0.5kb downstream 2324 true Chr01: 26422547-26424870 Glycine max
Glyma.01G087500 0.5kb downstream 0.5kb downstream 500 false Chr01: 26422547-26423046 Glycine max
Glyma.01G087500 1.0kb upstream 1.0kb upstream 2824 true Chr01: 26423047-26425870 Glycine max
Glyma.01G087500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 26424871-26425870 Glycine max
Glyma.01G087500 1.0kb downstream 1.0kb downstream 2824 true Chr01: 26422047-26424870 Glycine max
Glyma.01G087500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 26422047-26423046 Glycine max
Glyma.01G087500 2.0kb upstream 2.0kb upstream 3824 true Chr01: 26423047-26426870 Glycine max
Glyma.01G087500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 26424871-26426870 Glycine max
Glyma.01G087500 2.0kb downstream 2.0kb downstream 3824 true Chr01: 26421047-26424870 Glycine max
Glyma.01G087500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 26421047-26423046 Glycine max
Glyma.01G087500 5.0kb upstream 5.0kb upstream 6824 true Chr01: 26423047-26429870 Glycine max
Glyma.01G087500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 26424871-26429870 Glycine max
Glyma.01G087500 5.0kb downstream 5.0kb downstream 6824 true Chr01: 26418047-26424870 Glycine max
Glyma.01G087500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 26418047-26423046 Glycine max
Glyma.01G087500 10.0kb upstream 10.0kb upstream 11824 true Chr01: 26423047-26434870 Glycine max
Glyma.01G087500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 26424871-26434870 Glycine max
Glyma.01G087500 10.0kb downstream 10.0kb downstream 11824 true Chr01: 26413047-26424870 Glycine max
Glyma.01G087500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 26413047-26423046 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303798 5265 Fabidae View MSA
124062734 5270 Rosid View MSA
123743747 5271 Pentapetalae View MSA
122794960 5272 Eudicot View MSA
122047550 5273 Angiosperm View MSA
121310758 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.9533 0.0 69.8334 High  
cufflinks 3.78754 0.0 11.3895    
cufflinks 13.1519 0.0 35.339    
cufflinks 0.874741 0.0 3.12412    
cufflinks 11.3393 0.0 30.4643    
cufflinks 7.91439 0.0 21.7616    
cufflinks 0.0205628 0.0 0.0885622 Low Low
cufflinks 3.82374 0.0 11.4847    
cufflinks 9.1562 0.0 24.9421    
cufflinks 12.6     High  
cufflinks 90.413     High High
cufflinks 11.885     High  
cufflinks 6.954       Low
cufflinks 6.297       Low
cufflinks 44.052     High  
cufflinks 33.992     High  
cufflinks 92.93     High High
cufflinks 5.162       Low
cufflinks 6.144       Low
cufflinks 34.925     High  
cufflinks 144.254     High High
cufflinks 24.016     High  
cufflinks 13.273     High  
cufflinks 88.482     High High
cufflinks 22.727     High  
cufflinks 114.84     High High

0 Strain