Gene : Glyma.01G003400 G. max Wm82.a2.v1
Defline:  (1 of 12) PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  34
Name:  ? Glyma.01G003400 Secondary Identifier:  ? PAC:30541648
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G003400 0.5kb upstream 0.5kb upstream 2287 true Chr01: 379378-381664 Glycine max
Glyma.01G003400 0.5kb upstream 0.5kb upstream 500 false Chr01: 379378-379877 Glycine max
Glyma.01G003400 0.5kb downstream 0.5kb downstream 2287 true Chr01: 379878-382164 Glycine max
Glyma.01G003400 0.5kb downstream 0.5kb downstream 500 false Chr01: 381665-382164 Glycine max
Glyma.01G003400 1.0kb upstream 1.0kb upstream 2787 true Chr01: 378878-381664 Glycine max
Glyma.01G003400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 378878-379877 Glycine max
Glyma.01G003400 1.0kb downstream 1.0kb downstream 2787 true Chr01: 379878-382664 Glycine max
Glyma.01G003400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 381665-382664 Glycine max
Glyma.01G003400 2.0kb upstream 2.0kb upstream 3787 true Chr01: 377878-381664 Glycine max
Glyma.01G003400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 377878-379877 Glycine max
Glyma.01G003400 2.0kb downstream 2.0kb downstream 3787 true Chr01: 379878-383664 Glycine max
Glyma.01G003400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 381665-383664 Glycine max
Glyma.01G003400 5.0kb upstream 5.0kb upstream 6787 true Chr01: 374878-381664 Glycine max
Glyma.01G003400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 374878-379877 Glycine max
Glyma.01G003400 5.0kb downstream 5.0kb downstream 6787 true Chr01: 379878-386664 Glycine max
Glyma.01G003400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 381665-386664 Glycine max
Glyma.01G003400 10.0kb upstream 10.0kb upstream 11787 true Chr01: 369878-381664 Glycine max
Glyma.01G003400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 369878-379877 Glycine max
Glyma.01G003400 10.0kb downstream 10.0kb downstream 11787 true Chr01: 379878-391664 Glycine max
Glyma.01G003400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 381665-391664 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299810 5265 Fabidae View MSA
124072182 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.71038 0.0 13.6662   High
cufflinks 2.83084 0.0 8.82831    
cufflinks 1.0384 0.0 3.64482    
cufflinks 1.72501 0.0 5.74705    
cufflinks 1.15702 0.0 4.02638    
cufflinks 0.544776 0.0 1.99873   Low
cufflinks 1.88707 0.0 6.21776    
cufflinks 1.97625 0.0 6.46791    
cufflinks 1.0023 0.0 3.531    
cufflinks 0.861        
cufflinks 0.342       Low
cufflinks 1.533        
cufflinks 0.791        
cufflinks 0.918        
cufflinks 0.32       Low
cufflinks 4.743       High
cufflinks 0.461        
cufflinks 1.454        
cufflinks 2.232        
cufflinks 6.377       High
cufflinks 0.257       Low
cufflinks 5.667       High
cufflinks 4.833       High
cufflinks 0.224       Low
cufflinks 5.267       High
cufflinks 0.481        

0 Strain