Gene : Glyma.01G042900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11618//PTHR11618:SF23 - TRANSCRIPTION INITIATION FACTOR IIB-RELATED Genomic Order:  429
Name:  ? Glyma.01G042900 Secondary Identifier:  ? PAC:30543548
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G042900 0.5kb upstream 0.5kb upstream 2111 true Chr01: 4680672-4682782 Glycine max
Glyma.01G042900 0.5kb upstream 0.5kb upstream 500 false Chr01: 4682283-4682782 Glycine max
Glyma.01G042900 0.5kb downstream 0.5kb downstream 2111 true Chr01: 4680172-4682282 Glycine max
Glyma.01G042900 0.5kb downstream 0.5kb downstream 500 false Chr01: 4680172-4680671 Glycine max
Glyma.01G042900 1.0kb upstream 1.0kb upstream 2611 true Chr01: 4680672-4683282 Glycine max
Glyma.01G042900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 4682283-4683282 Glycine max
Glyma.01G042900 1.0kb downstream 1.0kb downstream 2611 true Chr01: 4679672-4682282 Glycine max
Glyma.01G042900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 4679672-4680671 Glycine max
Glyma.01G042900 2.0kb upstream 2.0kb upstream 3611 true Chr01: 4680672-4684282 Glycine max
Glyma.01G042900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 4682283-4684282 Glycine max
Glyma.01G042900 2.0kb downstream 2.0kb downstream 3611 true Chr01: 4678672-4682282 Glycine max
Glyma.01G042900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 4678672-4680671 Glycine max
Glyma.01G042900 5.0kb upstream 5.0kb upstream 6611 true Chr01: 4680672-4687282 Glycine max
Glyma.01G042900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 4682283-4687282 Glycine max
Glyma.01G042900 5.0kb downstream 5.0kb downstream 6611 true Chr01: 4675672-4682282 Glycine max
Glyma.01G042900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 4675672-4680671 Glycine max
Glyma.01G042900 10.0kb upstream 10.0kb upstream 11611 true Chr01: 4680672-4692282 Glycine max
Glyma.01G042900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 4682283-4692282 Glycine max
Glyma.01G042900 10.0kb downstream 10.0kb downstream 11611 true Chr01: 4670672-4682282 Glycine max
Glyma.01G042900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 4670672-4680671 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303484 5265 Fabidae View MSA
124067498 5270 Rosid View MSA
123742191 5271 Pentapetalae View MSA
122787938 5272 Eudicot View MSA
122042980 5273 Angiosperm View MSA
121346449 5274 Embryophyte View MSA
123427604 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.690708 0.0 2.50683   Low
cufflinks 1.02441 0.0 3.62531    
cufflinks 1.29255 0.0 4.47485    
cufflinks 1.17979 0.0 4.12272    
cufflinks 1.17774 0.0 4.10605    
cufflinks 1.3926 0.0 4.78155   High
cufflinks 1.37079 0.0 4.71343    
cufflinks 1.18603 0.0 4.1479    
cufflinks 0.909696 0.0 3.24364    
cufflinks 3.073        
cufflinks 2.042        
cufflinks 2.803        
cufflinks 2.275        
cufflinks 2.619        
cufflinks 1.493        
cufflinks 1.322        
cufflinks 6.539     High High
cufflinks 2.26        
cufflinks 2.021        
cufflinks 1.032       Low
cufflinks 1.736        
cufflinks 1.137       Low
cufflinks 2.052        
cufflinks 3.101        
cufflinks 1.01       Low
cufflinks 2.386        

0 Strain