Gene : Glyma.01G040300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR16263:SF4 - TETRATRICOPEPTIDE REPEAT PROTEIN 38 Genomic Order:  403
Name:  ? Glyma.01G040300 Secondary Identifier:  ? PAC:30543585
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G040300 0.5kb upstream 0.5kb upstream 6417 true Chr01: 4352553-4358969 Glycine max
Glyma.01G040300 0.5kb upstream 0.5kb upstream 500 false Chr01: 4352553-4353052 Glycine max
Glyma.01G040300 0.5kb downstream 0.5kb downstream 6417 true Chr01: 4353053-4359469 Glycine max
Glyma.01G040300 0.5kb downstream 0.5kb downstream 500 false Chr01: 4358970-4359469 Glycine max
Glyma.01G040300 1.0kb upstream 1.0kb upstream 6917 true Chr01: 4352053-4358969 Glycine max
Glyma.01G040300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 4352053-4353052 Glycine max
Glyma.01G040300 1.0kb downstream 1.0kb downstream 6917 true Chr01: 4353053-4359969 Glycine max
Glyma.01G040300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 4358970-4359969 Glycine max
Glyma.01G040300 2.0kb upstream 2.0kb upstream 7917 true Chr01: 4351053-4358969 Glycine max
Glyma.01G040300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 4351053-4353052 Glycine max
Glyma.01G040300 2.0kb downstream 2.0kb downstream 7917 true Chr01: 4353053-4360969 Glycine max
Glyma.01G040300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 4358970-4360969 Glycine max
Glyma.01G040300 5.0kb upstream 5.0kb upstream 10917 true Chr01: 4348053-4358969 Glycine max
Glyma.01G040300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 4348053-4353052 Glycine max
Glyma.01G040300 5.0kb downstream 5.0kb downstream 10917 true Chr01: 4353053-4363969 Glycine max
Glyma.01G040300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 4358970-4363969 Glycine max
Glyma.01G040300 10.0kb upstream 10.0kb upstream 15917 true Chr01: 4343053-4358969 Glycine max
Glyma.01G040300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 4343053-4353052 Glycine max
Glyma.01G040300 10.0kb downstream 10.0kb downstream 15917 true Chr01: 4353053-4368969 Glycine max
Glyma.01G040300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 4358970-4368969 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302716 5265 Fabidae View MSA
124066695 5270 Rosid View MSA
123740616 5271 Pentapetalae View MSA
122790919 5272 Eudicot View MSA
122043704 5273 Angiosperm View MSA
121346225 5274 Embryophyte View MSA
123380350 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.16201 0.0 22.9153    
cufflinks 7.06876 0.0 22.5706    
cufflinks 8.84905 0.0 35.9749    
cufflinks 9.22701 0.0 36.1357    
cufflinks 5.08072 0.0 22.6223    
cufflinks 2.38418 0.0 12.0822   Low
cufflinks 10.4196 0.0 39.7337   High
cufflinks 5.48306 0.0 23.6877    
cufflinks 1.85824 0.0 10.401   Low
cufflinks 1.175        
cufflinks 0.892        
cufflinks 2.117        
cufflinks 0.73        
cufflinks 0.72        
cufflinks 0.297       Low
cufflinks 3.159        
cufflinks 0.294       Low
cufflinks 2.276        
cufflinks 1.351        
cufflinks 5.298       High
cufflinks 0.641        
cufflinks 4.233       High
cufflinks 2.642        
cufflinks 0.584        
cufflinks 4.055       High
cufflinks 0.697        

0 Strain