Gene : Glyma.18G260100 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR12526:SF337 - STARCH SYNTHASE 2, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  2601
Name:  ? Glyma.18G260100 Secondary Identifier:  ? PAC:30558025
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYCOGENSYNTH-PWY Glycine max pathologic  
Gmax PWY-622 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G260100 0.5kb upstream 0.5kb upstream 2029 true Chr18: 54621765-54623793 Glycine max
Glyma.18G260100 0.5kb upstream 0.5kb upstream 500 false Chr18: 54621765-54622264 Glycine max
Glyma.18G260100 0.5kb downstream 0.5kb downstream 2029 true Chr18: 54622265-54624293 Glycine max
Glyma.18G260100 0.5kb downstream 0.5kb downstream 500 false Chr18: 54623794-54624293 Glycine max
Glyma.18G260100 1.0kb upstream 1.0kb upstream 2529 true Chr18: 54621265-54623793 Glycine max
Glyma.18G260100 1.0kb upstream 1.0kb upstream 1000 false Chr18: 54621265-54622264 Glycine max
Glyma.18G260100 1.0kb downstream 1.0kb downstream 2529 true Chr18: 54622265-54624793 Glycine max
Glyma.18G260100 1.0kb downstream 1.0kb downstream 1000 false Chr18: 54623794-54624793 Glycine max
Glyma.18G260100 2.0kb upstream 2.0kb upstream 3529 true Chr18: 54620265-54623793 Glycine max
Glyma.18G260100 2.0kb upstream 2.0kb upstream 2000 false Chr18: 54620265-54622264 Glycine max
Glyma.18G260100 2.0kb downstream 2.0kb downstream 3529 true Chr18: 54622265-54625793 Glycine max
Glyma.18G260100 2.0kb downstream 2.0kb downstream 2000 false Chr18: 54623794-54625793 Glycine max
Glyma.18G260100 5.0kb upstream 5.0kb upstream 6529 true Chr18: 54617265-54623793 Glycine max
Glyma.18G260100 5.0kb upstream 5.0kb upstream 5000 false Chr18: 54617265-54622264 Glycine max
Glyma.18G260100 5.0kb downstream 5.0kb downstream 6529 true Chr18: 54622265-54628793 Glycine max
Glyma.18G260100 5.0kb downstream 5.0kb downstream 5000 false Chr18: 54623794-54628793 Glycine max
Glyma.18G260100 10.0kb upstream 10.0kb upstream 11529 true Chr18: 54612265-54623793 Glycine max
Glyma.18G260100 10.0kb upstream 10.0kb upstream 10000 false Chr18: 54612265-54622264 Glycine max
Glyma.18G260100 10.0kb downstream 10.0kb downstream 11529 true Chr18: 54622265-54633793 Glycine max
Glyma.18G260100 10.0kb downstream 10.0kb downstream 10000 false Chr18: 54623794-54633793 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122242278 5265 Fabidae Singleton cluster - no MSA
123986995 5270 Rosid Singleton cluster - no MSA
123751940 5271 Pentapetalae View MSA
122774263 5272 Eudicot View MSA
122049203 5273 Angiosperm View MSA
121349172 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.356256 0.0 1.39519   Low
cufflinks 1.4575 0.0 5.36607    
cufflinks 0.559498 0.0 2.14791    
cufflinks 1.19619 0.0 4.4388    
cufflinks 0.560405 0.0 2.151    
cufflinks 0.358754 0.0 1.40414   Low
cufflinks 1.49655 0.0 5.48611    
cufflinks 2.06746 0.0 7.4356   High
cufflinks 0.547509 0.0 2.10594    
cufflinks 1.175        
cufflinks 0.161        
cufflinks 1.873        
cufflinks 0.226        
cufflinks 0.358        
cufflinks 0.263        
cufflinks 3.542       High
cufflinks 0.074       Low
cufflinks 3.548       High
cufflinks 1.78        
cufflinks 3.85       High
cufflinks 0.108       Low
cufflinks 4.374       High
cufflinks 3.895       High
cufflinks 0.125       Low
cufflinks 3.819       High
cufflinks 0.063     Low Low

0 Strain