Gene : Glyma.01G054000 G. max Wm82.a2.v1
Defline:  (1 of 9) PTHR11673 - TRANSLATION INITIATION FACTOR 5A-RELATED Genomic Order:  540
Name:  ? Glyma.01G054000 Secondary Identifier:  ? PAC:30544274
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G054000 0.5kb upstream 0.5kb upstream 2372 true Chr01: 6955912-6958283 Glycine max
Glyma.01G054000 0.5kb upstream 0.5kb upstream 500 false Chr01: 6957784-6958283 Glycine max
Glyma.01G054000 0.5kb downstream 0.5kb downstream 2372 true Chr01: 6955412-6957783 Glycine max
Glyma.01G054000 0.5kb downstream 0.5kb downstream 500 false Chr01: 6955412-6955911 Glycine max
Glyma.01G054000 1.0kb upstream 1.0kb upstream 2872 true Chr01: 6955912-6958783 Glycine max
Glyma.01G054000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6957784-6958783 Glycine max
Glyma.01G054000 1.0kb downstream 1.0kb downstream 2872 true Chr01: 6954912-6957783 Glycine max
Glyma.01G054000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6954912-6955911 Glycine max
Glyma.01G054000 2.0kb upstream 2.0kb upstream 3872 true Chr01: 6955912-6959783 Glycine max
Glyma.01G054000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6957784-6959783 Glycine max
Glyma.01G054000 2.0kb downstream 2.0kb downstream 3872 true Chr01: 6953912-6957783 Glycine max
Glyma.01G054000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6953912-6955911 Glycine max
Glyma.01G054000 5.0kb upstream 5.0kb upstream 6872 true Chr01: 6955912-6962783 Glycine max
Glyma.01G054000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6957784-6962783 Glycine max
Glyma.01G054000 5.0kb downstream 5.0kb downstream 6872 true Chr01: 6950912-6957783 Glycine max
Glyma.01G054000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6950912-6955911 Glycine max
Glyma.01G054000 10.0kb upstream 10.0kb upstream 11872 true Chr01: 6955912-6967783 Glycine max
Glyma.01G054000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6957784-6967783 Glycine max
Glyma.01G054000 10.0kb downstream 10.0kb downstream 11872 true Chr01: 6945912-6957783 Glycine max
Glyma.01G054000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6945912-6955911 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312678 5265 Fabidae View MSA
124072640 5270 Rosid View MSA
123750235 5271 Pentapetalae View MSA
122796875 5272 Eudicot View MSA
122047476 5273 Angiosperm View MSA
121345847 5274 Embryophyte View MSA
123426583 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.36922 0.0 31.4105   Low
cufflinks 14.8219 0.0 54.5482    
cufflinks 40.6925 0.0 162.369 High  
cufflinks 5.63309 0.0 32.8233   Low
cufflinks 32.7109 0.0 131.106 High  
cufflinks 106.052 0.0 458.896 High High
cufflinks 13.8533 0.0 66.0233    
cufflinks 25.768 0.0 104.384 High  
cufflinks 57.5169 0.0 227.417 High  
cufflinks 1.301        
cufflinks 0.482       Low
cufflinks 4.23       High
cufflinks 3.875       High
cufflinks 0.719        
cufflinks 3.063       High
cufflinks 0.927        
cufflinks 1.937        
cufflinks 1.801        
cufflinks 1.761        
cufflinks 0.861        
cufflinks 0.984        
cufflinks 0.96        
cufflinks 1.36        
cufflinks 0.447       Low
cufflinks 0.825        
cufflinks 2.153        

0 Strain