Gene : Glyma.01G053700 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG1004 - Exosomal 3'-5' exoribonuclease complex subunit Rrp40 Genomic Order:  537
Name:  ? Glyma.01G053700 Secondary Identifier:  ? PAC:30542707
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G053700 0.5kb upstream 0.5kb upstream 6295 true Chr01: 6798195-6804489 Glycine max
Glyma.01G053700 0.5kb upstream 0.5kb upstream 500 false Chr01: 6798195-6798694 Glycine max
Glyma.01G053700 0.5kb downstream 0.5kb downstream 6295 true Chr01: 6798695-6804989 Glycine max
Glyma.01G053700 0.5kb downstream 0.5kb downstream 500 false Chr01: 6804490-6804989 Glycine max
Glyma.01G053700 1.0kb upstream 1.0kb upstream 6795 true Chr01: 6797695-6804489 Glycine max
Glyma.01G053700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6797695-6798694 Glycine max
Glyma.01G053700 1.0kb downstream 1.0kb downstream 6795 true Chr01: 6798695-6805489 Glycine max
Glyma.01G053700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6804490-6805489 Glycine max
Glyma.01G053700 2.0kb upstream 2.0kb upstream 7795 true Chr01: 6796695-6804489 Glycine max
Glyma.01G053700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6796695-6798694 Glycine max
Glyma.01G053700 2.0kb downstream 2.0kb downstream 7795 true Chr01: 6798695-6806489 Glycine max
Glyma.01G053700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6804490-6806489 Glycine max
Glyma.01G053700 5.0kb upstream 5.0kb upstream 10795 true Chr01: 6793695-6804489 Glycine max
Glyma.01G053700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6793695-6798694 Glycine max
Glyma.01G053700 5.0kb downstream 5.0kb downstream 10795 true Chr01: 6798695-6809489 Glycine max
Glyma.01G053700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6804490-6809489 Glycine max
Glyma.01G053700 10.0kb upstream 10.0kb upstream 15795 true Chr01: 6788695-6804489 Glycine max
Glyma.01G053700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6788695-6798694 Glycine max
Glyma.01G053700 10.0kb downstream 10.0kb downstream 15795 true Chr01: 6798695-6814489 Glycine max
Glyma.01G053700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6804490-6814489 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301974 5265 Fabidae View MSA
124061201 5270 Rosid View MSA
123736741 5271 Pentapetalae View MSA
122789639 5272 Eudicot View MSA
122045630 5273 Angiosperm View MSA
121344862 5274 Embryophyte View MSA
123428759 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.97654 0.0 13.9916    
cufflinks 4.31418 0.0 17.9508   High
cufflinks 2.50377 0.0 12.185   Low
cufflinks 3.02265 0.0 14.0327    
cufflinks 3.39465 0.0 15.3506    
cufflinks 2.11605 0.0 10.788   Low
cufflinks 4.18322 0.0 17.769   High
cufflinks 3.78001 0.0 16.4072    
cufflinks 3.67149 0.0 16.0188    
cufflinks 0.234        
cufflinks 0.03     Low Low
cufflinks 0.363        
cufflinks 0.434        
cufflinks 0.629       High
cufflinks 0.282        
cufflinks 0.318        
cufflinks 0.135        
cufflinks 0.482        
cufflinks 0.563        
cufflinks 0.297        
cufflinks 0.05     Low Low
cufflinks 0.318        
cufflinks 0.445        
cufflinks 0.028     Low Low
cufflinks 0.341        
cufflinks 0.083        

0 Strain