Gene : Glyma.02G195900 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR22849:SF38 - E3 UBIQUITIN-PROTEIN LIGASE PUB22-RELATED Genomic Order:  1959
Name:  ? Glyma.02G195900 Secondary Identifier:  ? PAC:30507707
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G195900 0.5kb upstream 0.5kb upstream 1757 true Chr02: 37011827-37013583 Glycine max
Glyma.02G195900 0.5kb upstream 0.5kb upstream 500 false Chr02: 37013084-37013583 Glycine max
Glyma.02G195900 0.5kb downstream 0.5kb downstream 1757 true Chr02: 37011327-37013083 Glycine max
Glyma.02G195900 0.5kb downstream 0.5kb downstream 500 false Chr02: 37011327-37011826 Glycine max
Glyma.02G195900 1.0kb upstream 1.0kb upstream 2257 true Chr02: 37011827-37014083 Glycine max
Glyma.02G195900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 37013084-37014083 Glycine max
Glyma.02G195900 1.0kb downstream 1.0kb downstream 2257 true Chr02: 37010827-37013083 Glycine max
Glyma.02G195900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 37010827-37011826 Glycine max
Glyma.02G195900 2.0kb upstream 2.0kb upstream 3257 true Chr02: 37011827-37015083 Glycine max
Glyma.02G195900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 37013084-37015083 Glycine max
Glyma.02G195900 2.0kb downstream 2.0kb downstream 3257 true Chr02: 37009827-37013083 Glycine max
Glyma.02G195900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 37009827-37011826 Glycine max
Glyma.02G195900 5.0kb upstream 5.0kb upstream 6257 true Chr02: 37011827-37018083 Glycine max
Glyma.02G195900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 37013084-37018083 Glycine max
Glyma.02G195900 5.0kb downstream 5.0kb downstream 6257 true Chr02: 37006827-37013083 Glycine max
Glyma.02G195900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 37006827-37011826 Glycine max
Glyma.02G195900 10.0kb upstream 10.0kb upstream 11257 true Chr02: 37011827-37023083 Glycine max
Glyma.02G195900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 37013084-37023083 Glycine max
Glyma.02G195900 10.0kb downstream 10.0kb downstream 11257 true Chr02: 37001827-37013083 Glycine max
Glyma.02G195900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 37001827-37011826 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314147 5265 Fabidae View MSA
124068371 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.39915 0.0 18.7092    
cufflinks 0.13745 0.0 0.545068 Low  
cufflinks 0.116716 0.0 0.466291 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.27494 0.0 10.4471    
cufflinks 15.4937 0.0 41.7834   High
cufflinks 0.116931 0.0 0.465432 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.9052 0.0 6.55191    
cufflinks 6.689        
cufflinks 18.667     High  
cufflinks 0.543       Low
cufflinks 4.731        
cufflinks 1.191        
cufflinks 1.233        
cufflinks 3.376        
cufflinks 121.517     High High
cufflinks 0.346       Low
cufflinks 0.968        
cufflinks 1.029        
cufflinks 32.983     High High
cufflinks 1.198        
cufflinks 4.252        
cufflinks 41.076     High High
cufflinks 0.456       Low
cufflinks 70.069     High High

0 Strain