Gene : Glyma.02G102900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  1029
Name:  ? Glyma.02G102900 Secondary Identifier:  ? PAC:30507903
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G102900 0.5kb upstream 0.5kb upstream 4588 true Chr02: 9762048-9766635 Glycine max
Glyma.02G102900 0.5kb upstream 0.5kb upstream 500 false Chr02: 9762048-9762547 Glycine max
Glyma.02G102900 0.5kb downstream 0.5kb downstream 4588 true Chr02: 9762548-9767135 Glycine max
Glyma.02G102900 0.5kb downstream 0.5kb downstream 500 false Chr02: 9766636-9767135 Glycine max
Glyma.02G102900 1.0kb upstream 1.0kb upstream 5088 true Chr02: 9761548-9766635 Glycine max
Glyma.02G102900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 9761548-9762547 Glycine max
Glyma.02G102900 1.0kb downstream 1.0kb downstream 5088 true Chr02: 9762548-9767635 Glycine max
Glyma.02G102900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 9766636-9767635 Glycine max
Glyma.02G102900 2.0kb upstream 2.0kb upstream 6088 true Chr02: 9760548-9766635 Glycine max
Glyma.02G102900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 9760548-9762547 Glycine max
Glyma.02G102900 2.0kb downstream 2.0kb downstream 6088 true Chr02: 9762548-9768635 Glycine max
Glyma.02G102900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 9766636-9768635 Glycine max
Glyma.02G102900 5.0kb upstream 5.0kb upstream 9088 true Chr02: 9757548-9766635 Glycine max
Glyma.02G102900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 9757548-9762547 Glycine max
Glyma.02G102900 5.0kb downstream 5.0kb downstream 9088 true Chr02: 9762548-9771635 Glycine max
Glyma.02G102900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 9766636-9771635 Glycine max
Glyma.02G102900 10.0kb upstream 10.0kb upstream 14088 true Chr02: 9752548-9766635 Glycine max
Glyma.02G102900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 9752548-9762547 Glycine max
Glyma.02G102900 10.0kb downstream 10.0kb downstream 14088 true Chr02: 9762548-9776635 Glycine max
Glyma.02G102900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 9766636-9776635 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306791 5265 Fabidae View MSA
124065727 5270 Rosid View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.7424 0.0 68.5288   High
cufflinks 4.04762 0.0 16.8373    
cufflinks 33.2135 0.0 125.006 High High
cufflinks 7.92658 0.0 31.9486    
cufflinks 5.24887 0.0 20.3533    
cufflinks 3.60464 0.0 13.4129    
cufflinks 2.0464 0.0 9.38032   Low
cufflinks 9.29291 0.0 35.9544    
cufflinks 4.51015 0.0 18.172    
cufflinks 1.408        
cufflinks 7.88     High High
cufflinks 4.633        
cufflinks 1.132       Low
cufflinks 0.712       Low
cufflinks 7.154     High High
cufflinks 3.582        
cufflinks 0.932       Low
cufflinks 1.647        
cufflinks 1.022       Low
cufflinks 3.325        
cufflinks 7.826     High High
cufflinks 2.032        
cufflinks 1.198        
cufflinks 4.153        
cufflinks 4.505        
cufflinks 6.394     High High

0 Strain