Gene : Glyma.18G287300 G. max Wm82.a2.v1
Defline:  (1 of 40) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  2873
Name:  ? Glyma.18G287300 Secondary Identifier:  ? PAC:30556815
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G287300 0.5kb upstream 0.5kb upstream 5633 true Chr18: 56733797-56739429 Glycine max
Glyma.18G287300 0.5kb upstream 0.5kb upstream 500 false Chr18: 56733797-56734296 Glycine max
Glyma.18G287300 0.5kb downstream 0.5kb downstream 5633 true Chr18: 56734297-56739929 Glycine max
Glyma.18G287300 0.5kb downstream 0.5kb downstream 500 false Chr18: 56739430-56739929 Glycine max
Glyma.18G287300 1.0kb upstream 1.0kb upstream 6133 true Chr18: 56733297-56739429 Glycine max
Glyma.18G287300 1.0kb upstream 1.0kb upstream 1000 false Chr18: 56733297-56734296 Glycine max
Glyma.18G287300 1.0kb downstream 1.0kb downstream 6133 true Chr18: 56734297-56740429 Glycine max
Glyma.18G287300 1.0kb downstream 1.0kb downstream 1000 false Chr18: 56739430-56740429 Glycine max
Glyma.18G287300 2.0kb upstream 2.0kb upstream 7133 true Chr18: 56732297-56739429 Glycine max
Glyma.18G287300 2.0kb upstream 2.0kb upstream 2000 false Chr18: 56732297-56734296 Glycine max
Glyma.18G287300 2.0kb downstream 2.0kb downstream 7133 true Chr18: 56734297-56741429 Glycine max
Glyma.18G287300 2.0kb downstream 2.0kb downstream 2000 false Chr18: 56739430-56741429 Glycine max
Glyma.18G287300 5.0kb upstream 5.0kb upstream 10133 true Chr18: 56729297-56739429 Glycine max
Glyma.18G287300 5.0kb upstream 5.0kb upstream 5000 false Chr18: 56729297-56734296 Glycine max
Glyma.18G287300 5.0kb downstream 5.0kb downstream 10133 true Chr18: 56734297-56744429 Glycine max
Glyma.18G287300 5.0kb downstream 5.0kb downstream 5000 false Chr18: 56739430-56744429 Glycine max
Glyma.18G287300 10.0kb upstream 10.0kb upstream 15133 true Chr18: 56724297-56739429 Glycine max
Glyma.18G287300 10.0kb upstream 10.0kb upstream 10000 false Chr18: 56724297-56734296 Glycine max
Glyma.18G287300 10.0kb downstream 10.0kb downstream 15133 true Chr18: 56734297-56749429 Glycine max
Glyma.18G287300 10.0kb downstream 10.0kb downstream 10000 false Chr18: 56739430-56749429 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305570 5265 Fabidae View MSA
124072132 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.48198 0.0 15.314   Low
cufflinks 9.69561 0.0 26.0616    
cufflinks 6.60854 0.0 18.1238    
cufflinks 9.68543 0.0 26.0227    
cufflinks 5.94474 0.0 16.4987   Low
cufflinks 7.08911 0.0 19.3855    
cufflinks 9.50132 0.0 25.5724    
cufflinks 10.2682 0.0 27.5382   High
cufflinks 7.19546 0.0 19.6589    
cufflinks 5.761       High
cufflinks 2.042       Low
cufflinks 4.066        
cufflinks 3.37        
cufflinks 3.606        
cufflinks 2.975        
cufflinks 3.596        
cufflinks 2.656       Low
cufflinks 4.442        
cufflinks 6.078       High
cufflinks 4.23        
cufflinks 3.034        
cufflinks 4.176        
cufflinks 3.088        
cufflinks 2.964        
cufflinks 4.074        
cufflinks 4.206        

0 Strain