Gene : Glyma.01G189200 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR10896:SF17 - BETA-1,4-XYLOSYLTRANSFERASE IRX14-RELATED Genomic Order:  1892
Name:  ? Glyma.01G189200 Secondary Identifier:  ? PAC:30543446
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5800 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G189200 0.5kb upstream 0.5kb upstream 4388 true Chr01: 52432639-52437026 Glycine max
Glyma.01G189200 0.5kb upstream 0.5kb upstream 500 false Chr01: 52432639-52433138 Glycine max
Glyma.01G189200 0.5kb downstream 0.5kb downstream 4388 true Chr01: 52433139-52437526 Glycine max
Glyma.01G189200 0.5kb downstream 0.5kb downstream 500 false Chr01: 52437027-52437526 Glycine max
Glyma.01G189200 1.0kb upstream 1.0kb upstream 4888 true Chr01: 52432139-52437026 Glycine max
Glyma.01G189200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 52432139-52433138 Glycine max
Glyma.01G189200 1.0kb downstream 1.0kb downstream 4888 true Chr01: 52433139-52438026 Glycine max
Glyma.01G189200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 52437027-52438026 Glycine max
Glyma.01G189200 2.0kb upstream 2.0kb upstream 5888 true Chr01: 52431139-52437026 Glycine max
Glyma.01G189200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 52431139-52433138 Glycine max
Glyma.01G189200 2.0kb downstream 2.0kb downstream 5888 true Chr01: 52433139-52439026 Glycine max
Glyma.01G189200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 52437027-52439026 Glycine max
Glyma.01G189200 5.0kb upstream 5.0kb upstream 8888 true Chr01: 52428139-52437026 Glycine max
Glyma.01G189200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 52428139-52433138 Glycine max
Glyma.01G189200 5.0kb downstream 5.0kb downstream 8888 true Chr01: 52433139-52442026 Glycine max
Glyma.01G189200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 52437027-52442026 Glycine max
Glyma.01G189200 10.0kb upstream 10.0kb upstream 13888 true Chr01: 52423139-52437026 Glycine max
Glyma.01G189200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 52423139-52433138 Glycine max
Glyma.01G189200 10.0kb downstream 10.0kb downstream 13888 true Chr01: 52433139-52447026 Glycine max
Glyma.01G189200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 52437027-52447026 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041384 5273 Angiosperm View MSA
122303529 5265 Fabidae View MSA
124066029 5270 Rosid View MSA
123737943 5271 Pentapetalae View MSA
122790258 5272 Eudicot View MSA
121350855 5274 Embryophyte View MSA
123381907 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.49706 0.0 10.1968   Low
cufflinks 4.39416 0.0 12.5129    
cufflinks 8.1401 0.0 22.0544    
cufflinks 15.3502 0.0 40.9849    
cufflinks 8.29267 0.0 22.3354    
cufflinks 8.72728 0.0 23.4867    
cufflinks 4.68896 0.0 13.1958    
cufflinks 32.1966 0.0 89.3865 High High
cufflinks 8.08541 0.0 21.8434    
cufflinks 11.565     High High
cufflinks 1.494        
cufflinks 5.353       High
cufflinks 5.383       High
cufflinks 3.347        
cufflinks 0.539       Low
cufflinks 2.384        
cufflinks 4.145        
cufflinks 3.186        
cufflinks 3.871        
cufflinks 1.976        
cufflinks 1.795        
cufflinks 2.343        
cufflinks 2.834        
cufflinks 2.33        
cufflinks 1.876        
cufflinks 2.641        

0 Strain