Gene : Glyma.01G196200 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR10641:SF654 - TRANSCRIPTION FACTOR RAX1-RELATED Genomic Order:  1962
Name:  ? Glyma.01G196200 Secondary Identifier:  ? PAC:30544567
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G196200 0.5kb upstream 0.5kb upstream 2517 true Chr01: 53053308-53055824 Glycine max
Glyma.01G196200 0.5kb upstream 0.5kb upstream 500 false Chr01: 53055325-53055824 Glycine max
Glyma.01G196200 0.5kb downstream 0.5kb downstream 2517 true Chr01: 53052808-53055324 Glycine max
Glyma.01G196200 0.5kb downstream 0.5kb downstream 500 false Chr01: 53052808-53053307 Glycine max
Glyma.01G196200 1.0kb upstream 1.0kb upstream 3017 true Chr01: 53053308-53056324 Glycine max
Glyma.01G196200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 53055325-53056324 Glycine max
Glyma.01G196200 1.0kb downstream 1.0kb downstream 3017 true Chr01: 53052308-53055324 Glycine max
Glyma.01G196200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 53052308-53053307 Glycine max
Glyma.01G196200 2.0kb upstream 2.0kb upstream 4017 true Chr01: 53053308-53057324 Glycine max
Glyma.01G196200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 53055325-53057324 Glycine max
Glyma.01G196200 2.0kb downstream 2.0kb downstream 4017 true Chr01: 53051308-53055324 Glycine max
Glyma.01G196200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 53051308-53053307 Glycine max
Glyma.01G196200 5.0kb upstream 5.0kb upstream 7017 true Chr01: 53053308-53060324 Glycine max
Glyma.01G196200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 53055325-53060324 Glycine max
Glyma.01G196200 5.0kb downstream 5.0kb downstream 7017 true Chr01: 53048308-53055324 Glycine max
Glyma.01G196200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 53048308-53053307 Glycine max
Glyma.01G196200 10.0kb upstream 10.0kb upstream 12017 true Chr01: 53053308-53065324 Glycine max
Glyma.01G196200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 53055325-53065324 Glycine max
Glyma.01G196200 10.0kb downstream 10.0kb downstream 12017 true Chr01: 53043308-53055324 Glycine max
Glyma.01G196200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 53043308-53053307 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313314 5265 Fabidae View MSA
124071714 5270 Rosid View MSA
123746695 5271 Pentapetalae View MSA
122790538 5272 Eudicot View MSA
122047860 5273 Angiosperm View MSA
121310809 5274 Embryophyte View MSA
123348206 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0363315 0.0 0.152088 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.1407 0.0 4.0459    
cufflinks 0.216638 0.0 0.838153 Low  
cufflinks 0.0259375 0.0 0.111711 Low  
cufflinks 1.25578E-4 0.0 0.00272545 Low Low
cufflinks 0.880205 0.0 3.18006    
cufflinks 0.007     Low Low
cufflinks 1.093        
cufflinks 0.081     Low  
cufflinks 1.036        
cufflinks 0.51        
cufflinks 0.028     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.298       High
cufflinks 0.447        
cufflinks 0.013     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.776        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.277        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.638        

0 Strain