Gene : Glyma.02G047800 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR11581 - 30S/40S RIBOSOMAL PROTEIN S4 Genomic Order:  478
Name:  ? Glyma.02G047800 Secondary Identifier:  ? PAC:30508419
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G047800 0.5kb upstream 0.5kb upstream 3014 true Chr02: 4396176-4399189 Glycine max
Glyma.02G047800 0.5kb upstream 0.5kb upstream 500 false Chr02: 4398690-4399189 Glycine max
Glyma.02G047800 0.5kb downstream 0.5kb downstream 3014 true Chr02: 4395676-4398689 Glycine max
Glyma.02G047800 0.5kb downstream 0.5kb downstream 500 false Chr02: 4395676-4396175 Glycine max
Glyma.02G047800 1.0kb upstream 1.0kb upstream 3514 true Chr02: 4396176-4399689 Glycine max
Glyma.02G047800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4398690-4399689 Glycine max
Glyma.02G047800 1.0kb downstream 1.0kb downstream 3514 true Chr02: 4395176-4398689 Glycine max
Glyma.02G047800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4395176-4396175 Glycine max
Glyma.02G047800 2.0kb upstream 2.0kb upstream 4514 true Chr02: 4396176-4400689 Glycine max
Glyma.02G047800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4398690-4400689 Glycine max
Glyma.02G047800 2.0kb downstream 2.0kb downstream 4514 true Chr02: 4394176-4398689 Glycine max
Glyma.02G047800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4394176-4396175 Glycine max
Glyma.02G047800 5.0kb upstream 5.0kb upstream 7514 true Chr02: 4396176-4403689 Glycine max
Glyma.02G047800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4398690-4403689 Glycine max
Glyma.02G047800 5.0kb downstream 5.0kb downstream 7514 true Chr02: 4391176-4398689 Glycine max
Glyma.02G047800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4391176-4396175 Glycine max
Glyma.02G047800 10.0kb upstream 10.0kb upstream 12514 true Chr02: 4396176-4408689 Glycine max
Glyma.02G047800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4398690-4408689 Glycine max
Glyma.02G047800 10.0kb downstream 10.0kb downstream 12514 true Chr02: 4386176-4398689 Glycine max
Glyma.02G047800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4386176-4396175 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311195 5265 Fabidae View MSA
124070579 5270 Rosid View MSA
123750810 5271 Pentapetalae View MSA
122793916 5272 Eudicot View MSA
122046993 5273 Angiosperm View MSA
121344969 5274 Embryophyte View MSA
123426872 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 61.1879 0.0 170.364 High  
cufflinks 101.674 0.0 302.39 High  
cufflinks 36.0782 0.0 97.0333 High Low
cufflinks 59.7526 0.0 166.134 High  
cufflinks 164.762 0.0 532.688 High  
cufflinks 133.257 0.0 413.708 High  
cufflinks 268.724 0.0 969.221 High High
cufflinks 68.092 0.0 192.357 High  
cufflinks 101.916 0.0 303.488 High  
cufflinks 35.508     High  
cufflinks 11.316     High Low
cufflinks 30.917     High  
cufflinks 111.671     High High
cufflinks 163.553     High High
cufflinks 14.709     High Low
cufflinks 38.971     High  
cufflinks 25.55     High  
cufflinks 32.642     High  
cufflinks 56.511     High  
cufflinks 26.202     High  
cufflinks 19.034     High  
cufflinks 28.408     High  
cufflinks 47.853     High  
cufflinks 15.04     High Low
cufflinks 34.468     High  
cufflinks 26.587     High  

0 Strain