Gene : Glyma.02G061100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR34058:SF1 - OXYGEN-EVOLVING ENHANCER PROTEIN 1-1, CHLOROPLASTIC-RELATED Genomic Order:  611
Name:  ? Glyma.02G061100 Secondary Identifier:  ? PAC:30507538
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G061100 0.5kb upstream 0.5kb upstream 3142 true Chr02: 5550741-5553882 Glycine max
Glyma.02G061100 0.5kb upstream 0.5kb upstream 500 false Chr02: 5553383-5553882 Glycine max
Glyma.02G061100 0.5kb downstream 0.5kb downstream 3142 true Chr02: 5550241-5553382 Glycine max
Glyma.02G061100 0.5kb downstream 0.5kb downstream 500 false Chr02: 5550241-5550740 Glycine max
Glyma.02G061100 1.0kb upstream 1.0kb upstream 3642 true Chr02: 5550741-5554382 Glycine max
Glyma.02G061100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 5553383-5554382 Glycine max
Glyma.02G061100 1.0kb downstream 1.0kb downstream 3642 true Chr02: 5549741-5553382 Glycine max
Glyma.02G061100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 5549741-5550740 Glycine max
Glyma.02G061100 2.0kb upstream 2.0kb upstream 4642 true Chr02: 5550741-5555382 Glycine max
Glyma.02G061100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 5553383-5555382 Glycine max
Glyma.02G061100 2.0kb downstream 2.0kb downstream 4642 true Chr02: 5548741-5553382 Glycine max
Glyma.02G061100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 5548741-5550740 Glycine max
Glyma.02G061100 5.0kb upstream 5.0kb upstream 7642 true Chr02: 5550741-5558382 Glycine max
Glyma.02G061100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 5553383-5558382 Glycine max
Glyma.02G061100 5.0kb downstream 5.0kb downstream 7642 true Chr02: 5545741-5553382 Glycine max
Glyma.02G061100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 5545741-5550740 Glycine max
Glyma.02G061100 10.0kb upstream 10.0kb upstream 12642 true Chr02: 5550741-5563382 Glycine max
Glyma.02G061100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 5553383-5563382 Glycine max
Glyma.02G061100 10.0kb downstream 10.0kb downstream 12642 true Chr02: 5540741-5553382 Glycine max
Glyma.02G061100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 5540741-5550740 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122241861 5265 Fabidae Singleton cluster - no MSA
124063467 5270 Rosid View MSA
123739417 5271 Pentapetalae View MSA
122788254 5272 Eudicot View MSA
122047967 5273 Angiosperm View MSA
121344212 5274 Embryophyte View MSA
123425295 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 98.8388 0.0 309.024 High High
cufflinks 119.965 0.0 388.95 High High
cufflinks 22.7591 0.0 60.9248 High  
cufflinks 68.2201 0.0 201.009 High  
cufflinks 3.70445 0.0 11.1301   Low
cufflinks 6.93613 0.0 19.3276    
cufflinks 24.5124 0.0 65.7852 High  
cufflinks 21.5101 0.0 57.5351 High  
cufflinks 3.05875 0.0 9.43316   Low
cufflinks 60.144     High  
cufflinks 0.105       Low
cufflinks 51.62     High  
cufflinks 0.204        
cufflinks 0.053     Low Low
cufflinks 0.149        
cufflinks 180.288     High High
cufflinks 0.05     Low Low
cufflinks 53.631     High  
cufflinks 69.209     High  
cufflinks 193.048     High High
cufflinks 0.151        
cufflinks 175.534     High High
cufflinks 147.936     High  
cufflinks 0.198        
cufflinks 209.681     High High
cufflinks 0.066     Low Low

0 Strain