Gene : Glyma.02G028800 G. max Wm82.a2.v1
Defline:  (1 of 3) 3.4.24.34 - Neutrophil collagenase / Matrix metalloproteinase 8 Genomic Order:  288
Name:  ? Glyma.02G028800 Secondary Identifier:  ? PAC:30506958
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G028800 0.5kb upstream 0.5kb upstream 2412 true Chr02: 2624777-2627188 Glycine max
Glyma.02G028800 0.5kb upstream 0.5kb upstream 500 false Chr02: 2624777-2625276 Glycine max
Glyma.02G028800 0.5kb downstream 0.5kb downstream 2412 true Chr02: 2625277-2627688 Glycine max
Glyma.02G028800 0.5kb downstream 0.5kb downstream 500 false Chr02: 2627189-2627688 Glycine max
Glyma.02G028800 1.0kb upstream 1.0kb upstream 2912 true Chr02: 2624277-2627188 Glycine max
Glyma.02G028800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 2624277-2625276 Glycine max
Glyma.02G028800 1.0kb downstream 1.0kb downstream 2912 true Chr02: 2625277-2628188 Glycine max
Glyma.02G028800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 2627189-2628188 Glycine max
Glyma.02G028800 2.0kb upstream 2.0kb upstream 3912 true Chr02: 2623277-2627188 Glycine max
Glyma.02G028800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 2623277-2625276 Glycine max
Glyma.02G028800 2.0kb downstream 2.0kb downstream 3912 true Chr02: 2625277-2629188 Glycine max
Glyma.02G028800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 2627189-2629188 Glycine max
Glyma.02G028800 5.0kb upstream 5.0kb upstream 6912 true Chr02: 2620277-2627188 Glycine max
Glyma.02G028800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 2620277-2625276 Glycine max
Glyma.02G028800 5.0kb downstream 5.0kb downstream 6912 true Chr02: 2625277-2632188 Glycine max
Glyma.02G028800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 2627189-2632188 Glycine max
Glyma.02G028800 10.0kb upstream 10.0kb upstream 11912 true Chr02: 2615277-2627188 Glycine max
Glyma.02G028800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 2615277-2625276 Glycine max
Glyma.02G028800 10.0kb downstream 10.0kb downstream 11912 true Chr02: 2625277-2637188 Glycine max
Glyma.02G028800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 2627189-2637188 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121656193 5273 Angiosperm View MSA
122297787 5265 Fabidae View MSA
124036152 5270 Rosid View MSA
123609540 5271 Pentapetalae View MSA
122644188 5272 Eudicot View MSA
120928278 5274 Embryophyte View MSA
122968891 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 78.2577 0.0 232.479 High High
cufflinks 1.11116 0.0 3.91567    
cufflinks 0.156036 0.0 0.609586 Low Low
cufflinks 0.834051 0.0 3.00231    
cufflinks 5.53629 0.0 15.9334    
cufflinks 2.18633 0.0 7.15743    
cufflinks 0.488639 0.0 1.81526    
cufflinks 1.12117 0.0 3.94555    
cufflinks 2.28894 0.0 7.43916    
cufflinks 8.093     High  
cufflinks 17.946     High  
cufflinks 0.755       Low
cufflinks 5.786        
cufflinks 13.554     High  
cufflinks 15.679     High  
cufflinks 13.07     High  
cufflinks 19.148     High  
cufflinks 0.725       Low
cufflinks 0.22       Low
cufflinks 1.977        
cufflinks 127.746     High High
cufflinks 3.101        
cufflinks 1.37        
cufflinks 45.807     High High
cufflinks 2.644        
cufflinks 56.033     High High

0 Strain